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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|135881632|135883078|2|82,403|0,1043 | circCAMSAP1(NE,2L) | CAMSAP1 | LEPWALVWRTWCMDGVNTVCGEVVETRAFAHWRSCQALLNVQCLERTSVRPRGCHGVLDQQDNIPEDLRDPFYVDQYEQEHIKPPVIKLLLSSELYCRVCSLILKGDQVAALQGHQSVIQALSRKGIYVMESDDTPVTESDLSRAPIKMVSGLRWPPPGAILWSRGLSCGAPGAWMV | GCHGVLDQQDNIPEDLR | No | Junction | Junction | 17 | 2 | CTG | TGA | riboCIRC,TransCirc | Yes |
chr9|136221795|136226874|2|158,29|0,5050 | circQSOX2(NE,NE) | QSOX2 | LIPYESIVVTRALDGDKAFLEKLGVSSVPSCYLIYPNGSHGLINVLGQCHSRRSSHPPGDLRPDPV | RSSHPPGDLRPDPV | No | Alternative | Junction | 14 | 3 | CTG | TGA | TransCirc | Yes |
chr9|136429865|136430163|1|298|0 | circENST00000371712(NE) | ENST00000371712 | LDSSWSRRRQEGERLWKVKRGPAGGLGVASWRDEGLKHSGIRPVLPAALSQEQASVCLEAGPIWASAHLTAPHPGPGCPLKCPLLRGRPPPSGLCSPGSVGLILEQEKAGRGEALESEERPSWGAGCGQLEGRRP | GPAGGLGVASWR | No | Alternative | Junction | 12 | 1 | TTG | TAA | NA | Yes |
chr9|136429865|136430163|1|298|0 | circENST00000371712(NE) | ENST00000371712 | LDSSWSRRRQEGERLWKVKRGPAGGLGVASWRDEGLKHSGIRPVLPAALSQEQASVCLEAGPIWASAHLTAPHPGPGCPLKCPLLRGRPPPSGLCSPGSVGLILEQEKAGRGEALESEERPSWGAGCGQLEGRRP | LDSSWSR | No | Alternative | Junction | 7 | 1 | TTG | TAA | NA | No |
chr9|136429865|136430163|1|298|0 | circENST00000371712(NE) | ENST00000371712 | LDSSWSRRRQEGERLWKVKRGPAGGLGVASWRDEGLKHSGIRPVLPAALSQEQASVCLEAGPIWASAHLTAPHPGPGCPLKCPLLRGRPPPSGLCSPGSVGLILEQEKAGRGEALESEERPSWGAGCGQLEGRRP | RGPAGGLGVASWR | No | Alternative | Junction | 13 | 1 | TTG | TAA | NA | Yes |
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