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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
​*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|107937305|107939988|-|1|ciRNA|LAMB1|NM_002291|25 | ciLAMB1(25) | LAMB1 | LAWVLGISGRKKKIWCPLRACQKRDYIPKTALFLPSLFI | LAWVLGISGR | No | Alternative | Alternative | 10 | 1 | TTG | TAA | NA | No |
chr7|107937305|107939988|-|1|ciRNA|LAMB1|NM_002291|25 | ciLAMB1(25) | LAMB1 | MILGLGLRHLWEEEKNLVSFESLPEERLHSQNSSVSTVTIHLTRQIVIITGKLVPLLFFFNILSKDTCFRNQSGLILKYDVRFACFKKNCIIL | MILGLGLR | No | Alternative | Alternative | 8 | 2 | ATG | TGA | NA | No |
chr7|107951225|107955630|-|4|circRNA|LAMB1|NM_002291|24,23,22,21 | circLAMB1(24,23,22,21) | LAMB1 | LGLEAAPAASARNSSGETPTWSAEVLGWLLWRPHHWVRRSLPPLPLPRWSRQWTPVCQELLPRSCYFTACLCL | LGLEAAPAASAR | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr7|107951225|107955630|-|4|circRNA|LAMB1|NM_002291|24,23,22,21 | circLAMB1(24,23,22,21) | LAMB1 | LGLEAAPAASARNSSGETPTWSAEVLGWLLWRPHHWVRRSLPPLPLPRWSRQWTPVCQELLPRSCYFTACLCL | SLPPLPLPRWSR | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr7|108502490|108515447|-|3|circRNA|PNPLA8|NM_001256010|4,3,2 | circPNPLA8(4,3,2) | PNPLA8 | LETHSTFYQIILIHISNVRKKCLNKRKMNISGTNQNLKIKR | KMNISGTNQNLK | No | Alternative | Alternative | 12 | 2 | TTG | TAG | NA | No |
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