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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
​*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | TEFGWTLNY | 9 | IISYAQGFMLLRQAATEFGWTLNYDR | PGD | No | HLAthena | 1 | HLA-B*44:03 |
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | AATEFGWTLNY | 11 | IISYAQGFMLLRQAATEFGWTLNYDR | PGD | No | HLAthena | 1 | HLA-C*03:02 |
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | EFGWTLNY | 8 | IISYAQGFMLLRQAATEFGWTLNYDR | PGD | No | HLAthena | 1 | HLA-A*29:02 |
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | ATEFGWTLNY | 10 | IISYAQGFMLLRQAATEFGWTLNYDR | PGD | No | HLAthena | 1 | HLA-A*01:01 |
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | AATEFGWTL | 9 | IISYAQGFMLLRQAATEFGWTLNYDR | PGD | No | HLAthena | 1 | HLA-C*16:01 |
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