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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|39490556|39492890|3|28,41,140|0,136,2194 | NA | CDK12 | LQSHHLSNHIKRDQKFVVLVMEKEDKQKATGGNAVWTSLTLLGLLEKEPMAKYIKPRTKTQSKRNSSFKTCNHTTSATI | ATGGNAVWTSLTLLGLLEKEPMAK | Yes | Alternative | Junction | 24 | 3 | CTG | TAA | TransCirc | Yes |
chr17|39708320|39710481|2|199,119|0,2042 | circERBB2(S1,NE) | ERBB2 | LQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQLASVSCTAQPWSPTTQTRLSPCPIPRAGIHSAPAV | ELQLASVSCTAQPWSPTTQTR | No | Alternative | Junction | 21 | 1 | CTG | TGA | TransCirc | Yes |
chr17|41757633|41758870|3|151,120,156|0,765,1081 | circJUP(NE,NE,NE) | JUP | LIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTGNHRLDQESGPVPSQPCPAAGGSGHPPPRPTAGEGPPGCPAPRSCRHTAALHGWCEDGGDCGGLHRSTAHPRPGPHEPHGDLPAQHHSPVCAAPVLVGGEHPARGCRGAV | EAADAIDAEGASAPLMELLHSRNEGTGNHR | No | Junction | Junction | 30 | 1 | TTG | TGA | TransCirc | Yes |
chr17|41771646|41771809|1|163|0 | circJUP(2S) | JUP | MEEDEACGRQYTLKKTTTYTQGVPPSQVAADIHLRLGYPLGRQHLRALRQQQGHHGGG | LGYPLGR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
chr17|42717975|42719207|3|125,71,78|0,474,1154 | circEZH1(L1L,NE,NE) | EZH1 | MPPLMYINARIKKSRLNQNHVAQTASFCWQQKEFQETVPK | MPPLMYINAR | Yes | Alternative | Junction | 10 | 3 | ATG | TGA | TransCirc | No |
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