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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|132404625|132406289|+|1|circRNA|PWWP2B|ENST00000305233.5|2 | circPWWP2B(2) | PWWP2B | LRPPPGGARGRGARRTGPRQSRSRGARSSRSPTARPRARERWSRSPPACTALWSPSVPSRPRRTTAARTPRCWTESPGTGRPARPRPPSPS | LRPPPGGARGR | No | Alternative | Alternative | 11 | 2 | CTG | TGA | TransCirc | No |
chr10|133283077|133288309|-|5|circRNA|TUBGCP2|ENST00000252936.7|14,13,12,11,10 | circTUBGCP2(14,13,12,11,10) | TUBGCP2 | LPEGLHAHQPRAAEGLLQAHVCVRHVHQLHAGPSSATSSWTRATSSCTSWTSRRRSSGSRWRTSRPLAWKRSWSWRCA | AAEGLLQAHVCVR | No | Alternative | Junction | 13 | 3 | CTG | TGA | TransCirc | No |
chr10|133398434|133399619|+|3|circRNA|RP11-108K14.8|ENST00000468317.2|5,6,7 | circRP11-108K14.8(5,6,7) | RP11-108K14.8 | LEYCIMVIGVPNVGKSSLINSLRRQHLRKENYATLRRRRPKKCHFYQLCKG | ENYATLRR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr10|133456236|133460170|+|4|circRNA|SCART1|NR_002934|2,3,4,5 | circSCART1(2,3,4,5) | SCART1 | LAAGPGRCTGARGAPCVTMPGTCGTRTWSAGSWAVAAP | GAPCVTMPGTCGTRTWSAGSWAVAAP | No | Alternative | Alternative | 26 | 3 | CTG | TGA | NA | No |
chr10|13443431|13447265|-|1|ciRNA|BEND7|ENST00000486542.5|3 | ciBEND7(3) | BEND7 | LKILCPQNPGTPKNPLTEKVQPNVFSSSFGVVCVD | ILCPQNPGTPKNPLTEK | No | Alternative | Alternative | 17 | 1 | CTG | TAA | NA | No |
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