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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|121898840|121902620|-|2|circRNA|ATE1|ENST00000369040.7|5,4 | circATE1(5,4) | ATE1 | LSPLRTQSSSRLSASPFLCMSSIKWPYTRIHPMNVGRLRQRG | IHPMNVGR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr10|122050437|122088591|+|3|circRNA|TACC2|NM_001291876|3,4,5 | circTACC2(3,4,5) | TACC2 | LAHPCYLRFLRRMLQESWIKSLQMRPEVRKEQKEDFISSDSKVRAATREQSEYKKEAAGHARKP | EAAGHAR | No | Alternative | Junction | 7 | 3 | CTG | TGA | NA | No |
chr10|122050437|122088591|+|3|circRNA|TACC2|NM_001291876|3,4,5 | circTACC2(3,4,5) | TACC2 | MLPSVPKKDAPRVMDKVTSDETRGAEGTERGLYQLRLQGPRSHPGTVRI | GAEGTERGLYQLR | No | Junction | Junction | 13 | 2 | ATG | TAA | NA | No |
chr10|122082646|122088591|+|2|circRNA|TACC2|NM_001291876|4,5 | circTACC2(4,5) | TACC2 | LAHPCYLRFLRRMLQESWIKSLQMRPEVRKEQKALAALGLEASAPLLRVLPAWIHALCPQR | EQKALAALGLEASAPLLR | No | Junction | Junction | 18 | 3 | CTG | TGA | NA | No |
chr10|122082646|122088591|+|2|circRNA|TACC2|NM_001291876|4,5 | circTACC2(4,5) | TACC2 | LLAPSPPCCNQELQVGKSLQCKPAVVVPKPEPLRDQWTPCHAWTGCHFWPRASRQQGKRKQQQLQVQVPRPVGRAWQVMQQERQRAAWRGWESLPRTQSRAHQVVWTQALSKSPPSLASQTSGSTSPRSSRSLCSEPWPHLEKRQELGGVQWVKTSPGHWAQRSF | AWQVMQQERQR | No | Alternative | Alternative | 11 | 3 | TTG | TAG | NA | No |
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