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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|50924097|50932360|+|3|circRNA|ME2|ENST00000321341.9|11,12,13 | circME2(11,12,13) | ME2 | LFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGTESKNR | VFTPGQGNNVYIFPGTESKNR | No | Junction | Junction | 21 | 1 | TTG | TAG | TransCirc | No |
chr18|56717963|56779549|+|5|circRNA|WDR7|ENST00000357574.7|13,14,15,16,17 | circWDR7(13,14,15,16,17) | WDR7 | LLCTVLCCQTYWDWINLGLPFWRCWPEDGKIDAWRQEYSTASAL | CWPEDGKIDAWR | No | Alternative | Junction | 12 | 1 | CTG | TAG | TransCirc | No |
chr18|56779430|56816144|+|3|circRNA|WDR7|ENST00000357574.7|17,18,19 | circWDR7(17,18,19) | WDR7 | LESHQKPRRLSPRLLMPQGLKQKSRRKSMTLLTMTSPLVGVS | KSMTLLTMTSPLVGVS | No | Junction | Junction | 16 | 1 | CTG | TAG | TransCirc | No |
chr18|56779430|56816144|+|3|circRNA|WDR7|ENST00000357574.7|17,18,19 | circWDR7(17,18,19) | WDR7 | LESHQKPRRLSPRLLMPQGLKQKSRRKSMTLLTMTSPLVGVS | SMTLLTMTSPLVGVS | No | Junction | Junction | 15 | 1 | CTG | TAG | TransCirc | No |
chr18|58578813|58580548|-|1|circRNA|ALPK2|ENST00000361673.3|4 | circALPK2(4) | ALPK2 | LLPLRLSAHQRTHNCLLTWKMTGTGVGNMKQGHMKKKGQIRLMRRNILIRKKKASPRALPGQLTPPPPNPTIHSPSSHWAILTLVCPVLKILWVLKEQGTLERLMIQVTQKKLQMGCFFLIQVIFMKNKTDVATRQCIPWHQSSRMVT | GQIRLMR | No | Alternative | Alternative | 7 | 1 | CTG | TGA | TransCirc | No |
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