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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|44932652|45365301|-|9|circRNA|SUPT3H|ENST00000475057.5|10,9,8,7,6,5,4,3,2 | circSUPT3H(10,9,8,7,6,5,4,3,2) | SUPT3H | LQPVVLRLTAMPSSPATSERPFDATATGLAHFPHSQ | LTAMPSSPATSERPFDATATGLAHFPHSQ | No | Alternative | Alternative | 29 | 2 | CTG | TGA | TransCirc | No |
chr6|51867862|51887245|-|5|circRNA|PKHD1|ENST00000371117.7|48,47,46,45,44 | circPKHD1(48,47,46,45,44) | PKHD1 | LKFTNSSNLVAFPFPHAAILEDLDGSLSGKNRSHILASMETLSASCLVNSSFGRVVHGSACGGGVLFHRMSIGLGTECVVLAMATFSIS | MSIGLGTECVVLAMATFSIS | No | Junction | Junction | 20 | 3 | TTG | TGA | TransCirc | No |
chr6|51867862|51887245|-|5|circRNA|PKHD1|ENST00000371117.7|48,47,46,45,44 | circPKHD1(48,47,46,45,44) | PKHD1 | LKFTNSSNLVAFPFPHAAILEDLDGSLSGKNRSHILASMETLSASCLVNSSFGRVVHGSACGGGVLFHRMSIGLGTECVVLAMATFSIS | VVHGSACGGGVLFHRMSIGLGTECVVLAMATFSIS | No | Junction | Junction | 35 | 3 | TTG | TGA | TransCirc | No |
chr6|52464894|52479787|+|4|circRNA|EFHC1|NM_018100|6,7,8,9 | circEFHC1(6,7,8,9) | EFHC1 | LTKKCWNGILLKTSLLGSHSLSLGELSSFMIVIHLLDGITKRSLESLIYHVLM | KCWNGILLK | No | Alternative | Alternative | 9 | 2 | CTG | TGA | TransCirc | No |
chr6|52464894|52479787|+|4|circRNA|EFHC1|NM_018100|6,7,8,9 | circEFHC1(6,7,8,9) | EFHC1 | LTKKCWNGILLKTSLLGSHSLSLGELSSFMIVIHLLDGITKRSLESLIYHVLM | RSLESLIYHVLM | No | Alternative | Alternative | 12 | 2 | CTG | TGA | TransCirc | No |
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