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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|128184431|128184725|-|1|circRNA|PTPRK|ENST00000368226.8|7 | circPTPRK(7) | PTPRK | MCRTAKTHCSSSASWCWAYIFADPTKCQLDHWRWSYHPERSRVPNDIRILDRNPCSQCSNLQIMAFRSRYRI | CQLDHWRWSYHPER | No | Alternative | Junction | 14 | 2 | ATG | TGA | TransCirc | No |
chr6|128184431|128184725|-|1|circRNA|PTPRK|ENST00000368226.8|7 | circPTPRK(7) | PTPRK | MCRTAKTHCSSSASWCWAYIFADPTKCQLDHWRWSYHPERSRVPNDIRILDRNPCSQCSNLQIMAFRSRYRI | NPCSQCSNLQIMAFRSR | No | Alternative | Junction | 17 | 2 | ATG | TGA | TransCirc | No |
chr6|129049917|129192853|+|11|circRNA|LAMA2|ENST00000617695.4|2,3,4,5,6,7,8,9,10,11,12 | circLAMA2(2,3,4,5,6,7,8,9,10,11,12) | LAMA2 | LTFLAAFEWLPSRTTWTHLSRSASVTRRPGKPCRTATTGARRLPIWETKFIPCCPESCF | TATTGAR | No | Alternative | Junction | 7 | 2 | CTG | TAA | TransCirc | No |
chr6|130042684|130104575|+|17|circRNA|L3MBTL3|ENST00000529410.5|5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21 | circL3MBTL3(5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21) | L3MBTL3 | LNKDRIFPDRLSGEMPPASPSFPRNKRTDANESSSSPEIRLKNKS | TDANESSSSPEIRLK | No | Junction | Junction | 15 | 2 | TTG | TGA | TransCirc | No |
chr6|130885095|130904540|-|7|circRNA|EPB41L2|ENST00000528282.5|12,11,10,9,8,7,6 | circEPB41L2(12,11,10,9,8,7,6) | EPB41L2 | MDQSLMKDFPGAAGEISAYGPGLVSIAVVQDGDGRREVRSPTKAPHLQLIEGKTFHGYSLLM | APHLQLIEGKTFHGYSLLM | No | Junction | Junction | 19 | 3 | ATG | TGA | TransCirc | No |
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