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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|87178476|87195690|-|4|circRNA|KLHL8|ENST00000273963.9|5,4,3,2 | circKLHL8(5,4,3,2) | KLHL8 | LFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEVTANCTMAVEWVLKNV | HVGVISVEVTANCTMAVEWVLK | No | Junction | Junction | 22 | 3 | CTG | TGA | TransCirc | No |
chr4|88038250|88052158|+|4|circRNA|PKD2|NM_000297|4,5,6,7 | circPKD2(4,5,6,7) | PKD2 | LLSQYFLSGLSSQKAPYWMGCTGRCSPATRLKLTTEVSSSMRTCC | APYWMGCTGRCSPATR | No | Alternative | Junction | 16 | 2 | CTG | TAG | TransCirc | No |
chr4|88038250|88052158|+|4|circRNA|PKD2|NM_000297|4,5,6,7 | circPKD2(4,5,6,7) | PKD2 | LLSQYFLSGLSSQKAPYWMGCTGRCSPATRLKLTTEVSSSMRTCC | LKLTTEVSSSMR | No | Alternative | Junction | 12 | 2 | CTG | TAG | TransCirc | No |
chr4|88038250|88068061|+|10|circRNA|PKD2|NM_000297|4,5,6,7,8,9,10,11,12,13 | circPKD2(4,5,6,7,8,9,10,11,12,13) | PKD2 | LDLDHSSLPRPMSSRSFPRSLDDSEEDDDEDSGHSSRRRGSISSGVSYEEFQVSQKAPYWMGCTGRCSPATRLKLTTEVSSSMRTCC | GSISSGVSYEEFQVSQK | No | Junction | Junction | 17 | 1 | CTG | TAG | TransCirc | No |
chr4|88038250|88068061|+|10|circRNA|PKD2|NM_000297|4,5,6,7,8,9,10,11,12,13 | circPKD2(4,5,6,7,8,9,10,11,12,13) | PKD2 | LDLDHSSLPRPMSSRSFPRSLDDSEEDDDEDSGHSSRRRGSISSGVSYEEFQVSQKAPYWMGCTGRCSPATRLKLTTEVSSSMRTCC | GSISSGVSYEEFQVSQKAPYWMGCTGR | No | Junction | Junction | 27 | 1 | CTG | TAG | TransCirc | No |
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