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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr12|111485270|111486824|2|60,59|0,1495 | circATXN2(S1L,S3S).A | FSLYPIPM | 8 | SFSLYPIPMTPMPVNQAK | ATXN2 | No | MHCflurry,MHCnuggetsI,NetMHCcons,NetMHCpan,PickPocket | 5 | HLA-C*16:01 |
chr12|111485270|111486824|2|60,59|0,1495 | circATXN2(S1L,S3S).A | YPIPMTPM | 8 | SFSLYPIPMTPMPVNQAK | ATXN2 | No | HLAthena | 1 | HLA-B*35:01 |
chr12|111485270|111486824|2|60,59|0,1495 | circATXN2(S1L,S3S).A | EFNPRSFSL | 9 | EFNPRSFSLYPIPMTPMPVNQAK | ATXN2 | No | HLAthena | 1 | HLA-B*08:01 |
chr12|111485270|111486824|2|60,59|0,1495 | circATXN2(S1L,S3S).A | FSLYPIPM | 8 | EFNPRSFSLYPIPMTPMPVNQAK | ATXN2 | No | MHCflurry,MHCnuggetsI,NetMHCcons,NetMHCpan,PickPocket | 5 | HLA-C*16:01 |
chr12|111485270|111486824|3|36,94,64|0,501,1490 | circATXN2(S1L,NE,S3L) | THVPSLSQSLL | 11 | SSTHVPSLSQSLLLPQLHLGLK | ATXN2 | No | HLAthena | 1 | HLA-B*39:05 |
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