top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|72890626|72891110|3|127,57,33|0,306,451 | circPOM121(1,2S,S2) | POM121 | MRWQHLVLRRSEAEQLAQREVNFHVNIVQGPVSFKDVAVDFTQEEWWQLDPDEKITYGDVMLENYSHLVSLAYEVATSCTSEI | RSEAEQLAQR | No | Alternative | Junction | 10 | 2 | ATG | TGA | TransCirc | No |
chr7|72969591|72970119|2|337,127|0,401 | circENST00000436857(L1L,S2L) | ENST00000436857 | LKDVIREGAGDLVAPDASVLGTPWGGLSAGSMSSHSCDLCSSRAREGQGRWRRLERNDECLLVAPEWNAAVGRGLPGIKGPSEPHQSHSQEGQRGAPGRRLTPQGGQLGHGGKRVKPGSPGRGRRPRPGEGPDVGA | NDECLLVAPEWNAAVGR | Yes | Alternative | Junction | 17 | 2 | CTG | TAG | NA | Yes |
chr7|72969591|72970119|2|337,127|0,401 | circENST00000436857(L1L,S2L) | ENST00000436857 | LKDVIREGAGDLVAPDASVLGTPWGGLSAGSMSSHSCDLCSSRAREGQGRWRRLERNDECLLVAPEWNAAVGRGLPGIKGPSEPHQSHSQEGQRGAPGRRLTPQGGQLGHGGKRVKPGSPGRGRRPRPGEGPDVGA | VKPGSPGR | Yes | Alternative | Junction | 8 | 2 | CTG | TAG | NA | No |
chr7|74106204|74107157|2|39,148|0,805 | circLIMK1(NE,NE) | LIMK1 | LRSCSIDRSPGAGSLGSPASQRKDLGRSESLRVVCRPHRIFRPSDLIHGERGGGQLCPAETCLEELQHRQVSGRWLTGLPGLPAQGPGSL | IFRPSDLIHGERGGGQLCPAETCLEELQHR | No | Junction | Junction | 30 | 2 | TTG | TGA | NA | Yes |
chr7|74106204|74107157|2|39,148|0,805 | circLIMK1(NE,NE) | LIMK1 | LRSCSIDRSPGAGSLGSPASQRKDLGRSESLRVVCRPHRIFRPSDLIHGERGGGQLCPAETCLEELQHRQVSGRWLTGLPGLPAQGPGSL | WLTGLPGLPAQGPGSL | No | Alternative | Junction | 16 | 2 | TTG | TGA | NA | Yes |
Page 1 of 1
bottom of page