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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|27122558|27150396|3|84,104,89|0,17524,27749 | circHOXA3(NE,NE,2L) | HOXA3 | MAPSELRAPGHRKRRFPERLELETIPGSEFKHLSRGGAVQWAAQGKGRQWGPARRPAPLGEKLKGYVCRLAIQTVNFRSRSVQTTSSQNSLKNGSLRVKSAWTPEKAIP | GGAVQWAAQGKGR | No | Alternative | Junction | 13 | 3 | ATG | TGA | NA | Yes |
chr7|2730465|2730736|1|271|0 | circGNA12(NE) | GNA12 | MLLNSVPEPGPAAPAAVSEGHLPKGARCLFKLPCRFPKSP | MLLNSVPEPGPAAPAAVSEGHLPK | No | Alternative | Alternative | 24 | 1 | ATG | TAG | TransCirc | Yes |
chr7|29922687|29922926|1|239|0 | NA | SCRN1 | MQGRPDGLSIGKTEGKEVIDGYRSISLQDTSSGPTIPAKAITSHKPKYKAADFPGSSPHDLFPMSGSLKGFDLPPEHRKACKEDQMGLALGRQRARR | EDQMGLALGR | No | Alternative | Junction | 10 | 1 | ATG | TGA | NA | Yes |
chr7|29922687|29922926|1|239|0 | NA | SCRN1 | MQGRPDGLSIGKTEGKEVIDGYRSISLQDTSSGPTIPAKAITSHKPKYKAADFPGSSPHDLFPMSGSLKGFDLPPEHRKACKEDQMGLALGRQRARR | EDQMGLALGRQR | No | Alternative | Junction | 12 | 1 | ATG | TGA | NA | Yes |
chr7|29922687|29922926|1|239|0 | NA | SCRN1 | MQGRPDGLSIGKTEGKEVIDGYRSISLQDTSSGPTIPAKAITSHKPKYKAADFPGSSPHDLFPMSGSLKGFDLPPEHRKACKEDQMGLALGRQRARR | SISLQDTSSGPTIPAK | No | Alternative | Junction | 16 | 1 | ATG | TGA | NA | Yes |
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