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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr22|44735195|44735541|1|346|0 | circT235061(NE) | T235061 | LHMNVASWGTRRSGGALQGVATSPLRVCAHSHGSPRPGQHMAGWGLLPG | RSGGALQGVATSPLR | No | Alternative | Alternative | 15 | 1 | CTG | TGA | NA | Yes |
chr22|50249102|50249454|2|66,127|0,225 | circHDAC10(NE,S1L) | HDAC10 | LAFPARVRCRRSGAGTGPRLHCQPALEPGWDGKR | RSGAGTGPR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr22|50249102|50249454|2|66,127|0,225 | circHDAC10(NE,S1L) | HDAC10 | LAFPARVRCRRSGAGTGPRLHCQPALEPGWDGKR | SGAGTGPR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr22|50257081|50257396|1|315|0 | circMAPK12(S1L) | MAPK12 | MEPGTARWGCEDTEASVDVCCRGDLPGGACWIRDGSEPGPAGWVSGMQRLALSADSAPAPPTVTW | DGSEPGPAGWVSGMQR | No | Alternative | Alternative | 16 | 2 | ATG | TGA | NA | Yes |
chr22|50485378|50485869|1|491|0 | circADM2(NE) | ADM2 | LLSQVSCPQPSCLTPEAQNSDLHSPRYGPSTPLPSLLPLNPTRSHLLNLSRHLLLTQAPPAFGAMAVASSQAPVCIPLASAC | YGPSTPLPSLLPLNPTR | No | Junction | Junction | 17 | 3 | TTG | TGA | NA | Yes |
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