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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|38206576|38206809|1|233|0 | circSIPA1L3(NE) | SIPA1L3 | MIPSGERSQSPDASAPGGHTAGFCTTHNKVAACGAEAPA | SQSPDASAPGGHTAGFCTTHNK | No | Alternative | Junction | 22 | 3 | ATG | TGA | NA | No |
chr19|38206576|38206809|1|233|0 | circSIPA1L3(NE) | SIPA1L3 | MIPSGERSQSPDASAPGGHTAGFCTTHNKVAACGAEAPA | VAACGAEAPA | No | Alternative | Junction | 10 | 3 | ATG | TGA | NA | No |
chr19|38706043|38708195|2|88,79|0,2073 | circACTN4(L1,NE) | ACTN4 | LIHRHRPELIEYDKLRKRPRPRKGSFSGARERQPRIRTSMCRTSTSAGRMVLPSMP | TSTSAGR | No | Alternative | Junction | 7 | 3 | CTG | TGA | riboCIRC,TransCirc | No |
chr19|38880820|38889323|6|77,56,60,130,69,70|0,279,611,2806,8266,8433 | circSIRT2(NE,NE,NE,NE,NE,NE) | SIRT2 | LSLLHAPAEGQGATPALLHAEHRYPGANSRAGTGGLGGGARHLLHITLRQRQLPARIPAKLDEREDLL | HLLHITLRQR | No | Alternative | Junction | 10 | 1 | CTG | TGA | TransCirc | Yes |
chr19|39383855|39384107|1|252|0 | circSAMD4B(NE).B | SAMD4B | LGRRKGSKERKLSLLSLLPLHHSPHSARTGATFLSLTSPPASPQGSRLPRDKLTTTLWSLLRNI | LSLLSLLPLHHSPHSAR | No | Alternative | Junction | 17 | 3 | CTG | TGA | NA | Yes |
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