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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|61982197|61983114|2|93,164|0,753 | NA | MED13 | MDQEYGTAYTPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRTHGRQFMDNMSGGKVDEALVKSSCLHPWSKRNVMEVIWIKNMALLIHLKLILLLGCLLAVHLLVTAEQEFFLLHPPLGFQLQGLQGLMGVSSWITCQEEKLMKHL | THGRQFMDNMSGGK | No | Alternative | Junction | 14 | 2 | ATG | TGA | TransCirc | Yes |
chr17|63832061|63832264|1|203|0 | circSLC30A7(NE) | SLC30A7 | LEISKPARCGTRQALGPPSSPSSKGQHQSSQPPHSPYPGLHMHIPHTSGHARELETRSRHHQ | QALGPPSSPSSKGQHQSSQPPHSPYPGLHMHIPHTSGHAR | No | Alternative | Junction | 40 | 1 | TTG | TAG | TransCirc | Yes |
chr17|66707294|66707554|1|260|0 | circT152817(NE) | T152817 | LRFLLWNQEGDTSYSNQICHTREFYTTARGRKGGSRGSKMASPLKASNQPHKDVGSDTFLWAVKKVQVKGGLLMGLMFRLQSIQRRA | ASNQPHK | No | Alternative | Junction | 7 | 1 | CTG | TGA | NA | No |
chr17|6758337|6758959|2|375,75|0,547 | circXAF1(S2L,NE) | XAF1 | LGDEGPVLPAGEMGSGSQGKCSVLSAGEMGSESQGECSVLSAGEMGSESQGKCSVLSAGEMGSGSQGECSVLSAGQMGSESQGECSVLSAGEMGSGSQGECSVLPAGEMGSGRGKCSIFPAGEMGSGSHRVGPVLQSGSSPPCRRDGV | LGDEGPVLPAGEMGSGSQGK | No | Junction | Junction | 20 | 3 | TTG | TGA | NA | No |
chr17|74768584|74768813|1|229|0 | NA | SLC9A3R1 | MFFPDRNAAANGPRRWTGARKTNSSATSERPAATQ | NAAANGPR | No | Alternative | Junction | 8 | 3 | ATG | TGA | NA | No |
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