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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|155415743|155415923|2|108,20|0,160 | NA | ASH1L | LCFLSSQGKRSPHVPQRRSIRKQGCILTFTKLQTLMKHQLLAACAFSHPKGKEAPTSPKEEVSESRAVF | SPHVPQRR | Yes | Alternative | Junction | 8 | 2 | CTG | TGA | NA | No |
chr1|155415743|155415923|2|108,23|0,157 | NA | ASH1L | LCFLSSQGKRSPHVPQRRSIRKQGCILTFTKLQTLMKHQLRLAACAFSHPKGKEAPTSPKEEVSESRAVF | HQLRLAACAFSHPK | No | Alternative | Junction | 14 | 2 | CTG | TGA | NA | Yes |
chr1|155438326|155439068|2|44,147|0,595 | circASH1L(S2,2S).B | ASH1L | LLQRMVQNEDQEPMEKSIDAVIATASAPPEAITRGRRARE | MVQNEDQEPMEKSIDAVIATASAPPEAITR | No | Alternative | Junction | 30 | 2 | CTG | TAA | NA | Yes |
chr1|156051705|156051857|1|152|0 | circUBQLN4(2) | UBQLN4 | LVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQNSKRKSPGGLRLSRISWS | SPGGLRLSR | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
chr1|156054783|156054957|1|174|0 | circLAMTOR2(L1) | LAMTOR2 | LEASRAPWRPGAGQRDYGKQRAAARGRHLGDLGAKAQG | HLGDLGAK | No | Alternative | Junction | 8 | 3 | CTG | TAG | NA | No |
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