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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|308320|320729|2|45,87|0,12322 | NA | SLC30A7 | MVGHGGLAADVDHGGRRGSRVVGRPQHSHRDPHPQRDLRA | MVGHGGLAADVDHGGR | No | Alternative | Junction | 16 | 1 | ATG | TGA | NA | Yes |
chr11|33286412|33287511|2|111,89|0,1010 | circHIPK3(1S,S1) | HIPK3 | LFNISTISVLQVWPHKSWSTHHMFIKLSQVPFVV | SWSTHHMFIK | Yes | Alternative | Junction | 10 | 3 | TTG | TGA | riboCIRC | Yes |
chr11|33286412|33287511|2|165,24|0,1075 | circHIPK3(S1,1S) | HIPK3 | MVETLEILIISTISVLQVWPHKSWSTHHMFIKLSQVPFVV | MVETLEILIISTISVLQVWPHKSWSTHHMFIK | No | Junction | Junction | 32 | 1 | ATG | TGA | riboCIRC | Yes |
chr11|35197995|35198246|1|251|0 | circCD44(S1) | CD44 | MKKMKMKETDTSVFLDQALMMMKILSPAPSTPSLSFKNPGKSIIPSVPDFLPLQVGCLASSSATNASHHNRYVFKYHLSRLGAK | ETDTSVFLDQALMMMK | Yes | Alternative | Junction | 16 | 3 | ATG | TGA | NA | Yes |
chr11|36393845|36419303|4|112,271,81,49|0,7169,9452,25409 | circPRR5L(S1,NE,2,3) | PRR5L | LEQRSDCCDQRFQRGWLAKQRALCPERKHQAAVEE | HQAAVEE | No | Alternative | Junction | 7 | 3 | CTG | TGA | TransCirc | No |
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