top of page

The Maher Lab

McDonnell Genome Institute

Washington University School of Medicine in St. Louis

PepTransDB

The Maher Lab | Washington University

LncRNA Peptides

CircRNA Peptides

lncRNA Peptides

Use criteria below to search among 19,871 unique lncRNA peptides:

*Click Transcript to view full ORF and comprehensive information in new page.

Transcript*	Cancer	Peptide Length	CPC Coding Probability	CPC Label	ORF Length	Chromosome	Start	End	Strand	Max Probability	Gene Name	Conservation Score	PhyloCSF Frame 1	PhyloCSF Frame 2	PhyloCSF Frame 3	No. of Spectra	CNTI Index	CNTI Score	Peptide	Modified Peptide	ORF
lnc-SLC16A3-2:1	BRCA-HER2-enriched	7	0.113314	noncoding	114	chr17	82214226	82217352	+	1	lnc-SLC16A3-2	0.106	-3.239	0	-4.008	5	noncoding	-0.261998108	EAPLDRK	n[145]EAPLDRK	LPGSQVLRPERSQEMKGPGGCEWASVSGCSRRRGVGTDSCLRAGGREAPLDRKTLQEQTSKTGTVQMGPGAGQRRQTCPTAAVTTATSWRSRPGGRASAARDPGVDTGRTRGCS
lnc-SLC16A3-2:1	BRCA-Basal-like	7	0.113314	noncoding	114	chr17	82214226	82217352	+	1	lnc-SLC16A3-2	0.106	-3.239	0	-4.008	5	noncoding	-0.261998108	EAPLDRK	n[145]EAPLDRK	LPGSQVLRPERSQEMKGPGGCEWASVSGCSRRRGVGTDSCLRAGGREAPLDRKTLQEQTSKTGTVQMGPGAGQRRQTCPTAAVTTATSWRSRPGGRASAARDPGVDTGRTRGCS
lnc-SIK1B-187:1	BRCA-Luminal A	11	0.0607206	noncoding	75	chr21	6318433	6360415	+	0.1937	lnc-SIK1B-187	0.815	0	0	0	1	noncoding	-0.436646948	FNNNIIQMSLK	n[145]FNNNIIQMSLK	LTHLYCDLLRTHTSCSWEIAVYNSNKWGKFNNNIIQMSLKAGHVFKAYTTWAYICTTIIIYKLQFGWELKVQKIC
lnc-SIK1B-187:1	BRCA-Luminal A	8	0.0607206	noncoding	75	chr21	6318433	6360415	+	0.0536	lnc-SIK1B-187	0.815	0	0	0	1	noncoding	-0.436646948	LQFGWELK	n[145]LQFGWELK	LTHLYCDLLRTHTSCSWEIAVYNSNKWGKFNNNIIQMSLKAGHVFKAYTTWAYICTTIIIYKLQFGWELKVQKIC
lnc-SIK2-2:1	OV	13	0.0285726	noncoding	35	chr11	111795409	111797938	+	0.5917	lnc-SIK2-2	0.987	-5.664	-6.02	-5.019	7	noncoding	-0.35464891	LFLSILGIAEEAK	n[145]LFLSILGIAEEAK	LFLSILGIAEEAKGTTMIDIQGKNKKLQLLLRREN

Page 1 of 1

bottom of page