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lncRNA Peptides
Use criteria below to search among 19,871 unique lncRNA peptides:
*Click Transcript to view full ORF and comprehensive information in new page.
Transcript* | Cancer | Peptide Length | CPC Coding Probability | CPC Label | ORF Length | Chromosome | Start | End | Strand | Max Probability | Gene Name | Conservation Score | PhyloCSF Frame 1 | PhyloCSF Frame 2 | PhyloCSF Frame 3 | No. of Spectra | CNTI Index | CNTI Score | Peptide | Modified Peptide | ORF |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
lnc-SMURF1-1:1 | OSCC | 15 | 0.588456 | coding | 140 | chr7 | 98998537 | 98999930 | - | 0.6128 | lnc-SMURF1-1 | 1 | 0 | 0 | 0 | 2 | noncoding | -0.316401583 | LTDLQNEYLQADEAK | n[145]LTDLQNEYLQADEAK | MHVLLGVKPVYCKAYLKDCFEIQIRDGQVQCLNCSEPKCPSVATPGQVKEPAEAEFSARHGCLLLPSTLELVADVVCCPRLWGPAGPGCTTGICSSCNFAFCTLCRLTYHGASPCKVMAEKLTDLQNEYLQADEAKTRFL |
lnc-SMURF2-2:1 | PRAD | 8 | 0.021782 | noncoding | 34 | chr17 | 64747263 | 64747492 | - | 0.5883 | lnc-SMURF2-2 | 1 | -3.461 | -3.922 | -3.718 | 1 | noncoding | -0.42306438 | MLELELSR | M[147]LELELSR | MLELELSRKWDQCLADAVVKTGTGFGLGIVFSLL |
lnc-SNAI1-3:1 | BRCA-Luminal B | 12 | 0.0115794 | noncoding | 40 | chr20 | 50078877 | 50093698 | + | 0.9969 | lnc-SNAI1-3 | 0.269 | -4.735 | -4.474 | -5.087 | 33 | noncoding | -0.429211667 | VTQQIAHVLIMK | n[145]VTQQIAHVLIMK | MSYSSALFRCFNNYVDIRVTQQIAHVLIMKDWSQEASTHR |
lnc-SNAI1-3:1 | BRCA-Basal-like | 12 | 0.0115794 | noncoding | 40 | chr20 | 50078877 | 50093698 | + | 0.9969 | lnc-SNAI1-3 | 0.269 | -4.735 | -4.474 | -5.087 | 33 | noncoding | -0.429211667 | VTQQIAHVLIMK | n[145]VTQQIAHVLIMK | MSYSSALFRCFNNYVDIRVTQQIAHVLIMKDWSQEASTHR |
lnc-SNAI1-3:1 | BRCA-HER2-enriched | 12 | 0.0115794 | noncoding | 40 | chr20 | 50078877 | 50093698 | + | 0.9969 | lnc-SNAI1-3 | 0.269 | -4.735 | -4.474 | -5.087 | 33 | noncoding | -0.429211667 | VTQQIAHVLIMK | n[145]VTQQIAHVLIMK | MSYSSALFRCFNNYVDIRVTQQIAHVLIMKDWSQEASTHR |
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