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PepTransDB

The Maher Lab | Washington University

lncRNA Peptides

Use criteria below to search among 19,871 unique lncRNA peptides:

*Click Transcript to view full ORF and comprehensive information in new page. 

Transcript*
Cancer
Peptide Length
CPC Coding Probability
CPC Label
ORF Length
Chromosome
Start
End
Strand
Max Probability
Gene Name
Conservation Score
PhyloCSF Frame 1
PhyloCSF Frame 2
PhyloCSF Frame 3
No. of Spectra
CNTI Index
CNTI Score
Peptide
Modified Peptide
ORF
lnc-TPO-12:1
BRCA-HER2-enriched
7
0.121219
noncoding
135
chr2
2298238
2306115
+
0.9991
lnc-TPO-12
0.236
-4.245
-3.445
-3.432
3
noncoding
-0.383347174
REAACLK
n[145]REAACLK
LCSGSSQQAPLDRAHILEDTVLRTIHLPTETKRRRLTPNKPRAGRREAACLKMTTVHSCVIIETIAKDSHLPSQRTTYVTRHSRKNLPRLLLHTLKNIEQHVTSKCPDLTTVVPAAGSCQQSQDFCFVFLIRSVS
lnc-TPO-12:1
OV
8
0.121219
noncoding
47
chr2
2298238
2306115
+
0.8213
lnc-TPO-12
0.061
0
0
0
20
noncoding
-0.383347174
MAMAASEK
n[145]MAM[147]AASEK
MAMAASEKLYKNSKLSGFGIQTIVCQPWKMHLTKIFIWVPSSVLSRY
lnc-TPO-5:1
HCC
9
0.766135
coding
100
chr2
1824411
1828667
+
0.9337
lnc-TPO-5
0.017
0
-4.301
-4.526
2
noncoding
-0.31498587
EASGLGAGK
n[230]EASGLGAGK
LWVLREWPESQTFSLSPESNMELGKETSDTPLPCLPDGDRHREASGLGAGKVEELPMRLVLWQGKGPPRSCHLPQRCTWDEDGGEAPQRPSYGEQALTIQ
lnc-TPP2-2:1
OV
17
0.0322517
noncoding
54
chr13
102679425
102679958
+
0.0774
lnc-TPP2-2
0.128
-4.485
-3.945
-4.249
1
noncoding
-0.391825005
NINTCISILVTPSGLAR
n[145]NINTCISILVTPSGLAR
MRNINTCISILVTPSGLARVQSLSMKATCMFSLTHSWTFTCTHIQVPICIGLVQ
lnc-TPP2-2:1
OV
24
0.0322517
noncoding
54
chr13
102679425
102679958
+
0.6815
lnc-TPP2-2
0.128
-4.485
-3.945
-4.249
3
noncoding
-0.391825005
NINTCISILVTPSGLARVQSLSMK
n[145]NINTCISILVTPSGLARVQSLSMK
MRNINTCISILVTPSGLARVQSLSMKATCMFSLTHSWTFTCTHIQVPICIGLVQ
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