top of page
lncRNA Peptides
Use criteria below to search among 19,871 unique lncRNA peptides:
*Click Transcript to view full ORF and comprehensive information in new page.
Transcript* | Cancer | Peptide Length | CPC Coding Probability | CPC Label | ORF Length | Chromosome | Start | End | Strand | Max Probability | Gene Name | Conservation Score | PhyloCSF Frame 1 | PhyloCSF Frame 2 | PhyloCSF Frame 3 | No. of Spectra | CNTI Index | CNTI Score | Peptide | Modified Peptide | ORF |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
lnc-USO1-2:1 | OV | 20 | 0.157783 | noncoding | 34 | chr4 | 75830750 | 75832705 | + | 0.5307 | lnc-USO1-2 | 0.07 | 0 | 0 | 0 | 2 | noncoding | -0.401769447 | VGDALAWWLMPVIPALWEAK | n[145]VGDALAWWLMPVIPALWEAK | MVGDALAWWLMPVIPALWEAKAGGSPEVRSSRPA |
lnc-USP12-9:14 | HCC | 12 | 0.13793 | noncoding | 74 | chr13 | 27178262 | 27208001 | - | 0.9999 | lnc-USP12-9 | 0.177 | -4.243 | -4.452 | -4.888 | 7 | noncoding | -0.343963205 | MDTLYSPAGVLK | n[43]M[147]DTLYSPAGVLK | LRTVTSNTQYWQQCNKMDTLYSPAGVLKKRKEEKEKRKEAEGRTLLQYWKQADYLNYGGAMEQEKADEERHPSS |
lnc-USP12-9:3 | BRCA-HER2-enriched | 7 | 0.5 | coding | 146 | chr13 | 27190660 | 27251260 | - | 0.9966 | lnc-USP12-9 | 0.331 | 0 | 0 | 0 | 45 | noncoding | -0.308490218 | WADGLLK | n[145]WADGLLK | MPTQNLRLQPWLPPTPLPEISPGAEGASSGFGQTPRGALTVQRWADGLLKRGQSGRRGQGGAKSEQGLPARCHLSVQSQLTAASDSLQLLTHCSLCLPGSSNPSTSASRVAGTTDMHHQAWLIFVYFCRDRVSPCCPGWSRTPGLK |
lnc-USP12-9:3 | BRCA-Luminal A | 7 | 0.5 | coding | 146 | chr13 | 27190660 | 27251260 | - | 0.9966 | lnc-USP12-9 | 0.331 | 0 | 0 | 0 | 45 | noncoding | -0.308490218 | WADGLLK | n[145]WADGLLK | MPTQNLRLQPWLPPTPLPEISPGAEGASSGFGQTPRGALTVQRWADGLLKRGQSGRRGQGGAKSEQGLPARCHLSVQSQLTAASDSLQLLTHCSLCLPGSSNPSTSASRVAGTTDMHHQAWLIFVYFCRDRVSPCCPGWSRTPGLK |
lnc-USP12-9:3 | BRCA-Luminal B | 7 | 0.5 | coding | 146 | chr13 | 27190660 | 27251260 | - | 0.9966 | lnc-USP12-9 | 0.331 | 0 | 0 | 0 | 45 | noncoding | -0.308490218 | WADGLLK | n[145]WADGLLK | MPTQNLRLQPWLPPTPLPEISPGAEGASSGFGQTPRGALTVQRWADGLLKRGQSGRRGQGGAKSEQGLPARCHLSVQSQLTAASDSLQLLTHCSLCLPGSSNPSTSASRVAGTTDMHHQAWLIFVYFCRDRVSPCCPGWSRTPGLK |
Page 1 of 1
bottom of page