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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|158868101|158870469|+|2|circRNA|FNIP2|NM_020840|13,14 | circFNIP2(13,14) | FNIP2 | LLMWLRTRRFLGALLNLAFRRMFAVLRIGFQRGMKASLTRVLQRTEAAETTWQQILLGSSATLLTWAQPPTVQEEREGGGWRPLEVCM | LLMWLRTR | No | Alternative | Alternative | 8 | 2 | CTG | TGA | TransCirc | No |
chr4|158868101|158870469|+|2|circRNA|FNIP2|NM_020840|13,14 | circFNIP2(13,14) | FNIP2 | LYPPSYHQQQQRDTTPGRQGFLSAQRALTVETWVLNLTKKLTGGQSRVLRLAAQGAWGQHQTLPGNLRMHFVGMRKIKRHRKMALQDFPAVKFWGQE | LAAQGAWGQHQTLPGNLR | No | Alternative | Alternative | 18 | 2 | TTG | TGA | TransCirc | No |
chr4|158868101|158870469|+|2|circRNA|FNIP2|NM_020840|13,14 | circFNIP2(13,14) | FNIP2 | LYPPSYHQQQQRDTTPGRQGFLSAQRALTVETWVLNLTKKLTGGQSRVLRLAAQGAWGQHQTLPGNLRMHFVGMRKIKRHRKMALQDFPAVKFWGQE | LTGGQSR | No | Alternative | Alternative | 7 | 2 | TTG | TGA | TransCirc | No |
chr4|158868101|158870469|+|2|circRNA|FNIP2|NM_020840|13,14 | circFNIP2(13,14) | FNIP2 | LYPPSYHQQQQRDTTPGRQGFLSAQRALTVETWVLNLTKKLTGGQSRVLRLAAQGAWGQHQTLPGNLRMHFVGMRKIKRHRKMALQDFPAVKFWGQE | LTGGQSRVLR | No | Alternative | Alternative | 10 | 2 | TTG | TGA | TransCirc | No |
chr4|159304341|159356158|+|22|circRNA|RAPGEF2|ENST00000264431.8|2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23 | circRAPGEF2(2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23) | RAPGEF2 | LEFPLLTFQKGTPIQPGNRRTTTWPFRDRGWSHDPPTQLGLHPYSSHMGIPPAAGL | GTPIQPGNRR | No | Alternative | Alternative | 10 | 1 | TTG | TGA | NA | No |
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