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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|65429519|65440012|-|4|circRNA|MAGI1|ENST00000330909.12|12,11,10,9 | circMAGI1(12,11,10,9) | MAGI1 | LGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVNGMKDARPSSPADVASNSSHGYPNDTVSLASSIATQPELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLVECPKGSEVTLLVQRGATSTGRHNMRTRF | GATSTGR | No | Alternative | Junction | 7 | 3 | TTG | TAG | TransCirc | No |
chr3|65429519|65440012|-|4|circRNA|MAGI1|ENST00000330909.12|12,11,10,9 | circMAGI1(12,11,10,9) | MAGI1 | LGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVNGMKDARPSSPADVASNSSHGYPNDTVSLASSIATQPELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLVECPKGSEVTLLVQRGATSTGRHNMRTRF | GATSTGRHNMR | No | Junction | Junction | 11 | 3 | TTG | TAG | TransCirc | No |
chr3|65429519|65440012|-|4|circRNA|MAGI1|ENST00000330909.12|12,11,10,9 | circMAGI1(12,11,10,9) | MAGI1 | LGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVNGMKDARPSSPADVASNSSHGYPNDTVSLASSIATQPELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLVECPKGSEVTLLVQRGATSTGRHNMRTRF | GSEVTLLVQRGATSTGR | No | Junction | Junction | 17 | 3 | TTG | TAG | TransCirc | No |
chr3|65857046|65857197|+|1|ciRNA|Unknown|T244789|2 | ciUnknown(2).E | Unknown | LPESWSEAFRTGNRGNGAYWGSWPLHTHRLHLAERQPFFLNSSWPLFLRSVARVMVRSI | SVARVMVR | No | Alternative | Junction | 8 | 1 | TTG | TAG | NA | No |
chr3|66378409|66380953|+|2|circRNA|SLC25A26|ENST00000464350.6|11,12 | circSLC25A26(11,12) | SLC25A26 | LALGAGPSGSPAALVMWRMLLVTPTRLRAIWRTWLCAVSGHRLGVEGLSPGVTVHFGVAVTAYDPATVF | LGVEGLSPGVTVHFGVAVTAYDPATVF | No | Alternative | Alternative | 27 | 3 | TTG | TGA | TransCirc | No |
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