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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chrY|19043162|19044695|-|2|circRNA|TTTY14|ENST00000447937.1|6,5 | circTTTY14(6,5) | TTTY14 | MREARCARWTLGSSFVPASPRFQGSSLNKGNYCSSGGCEDVGDLRAEL | FQGSSLNKGNYCSSGGCEDVGDLR | No | Alternative | Alternative | 24 | 1 | ATG | TAG | NA | No |
chrY|338603|361590|-|11|circRNA|PPP2R3B|NM_013239_DUP3|12,11,10,9,8,7,6,5,4,3,2 | circPPP2R3B(12,11,10,9,8,7,6,5,4,3,2) | PPP2R3B | LRESPGRTGSDTERRASAPGHEPKHSDLLLPQRTPAGLRQRGCRHQQDREHLRPVPPREGHHG | TPAGLRQR | No | Alternative | Junction | 8 | 2 | CTG | TGA | NA | No |
chr3|47105996|47124548|-|4|circRNA|SETD2|NM_014159|6,5,4,3 | circSETD2(6,5,4,3) | SETD2 | MPQKLCLQFMKIILALLKVQMMKVIQKIQIRMIAVFQETVSSLLWLCQRILLCPWKKQVLVLLGAVKVIDTILTIGKMRDWSQGDICMRKNLKV | VIDTILTIGK | No | Alternative | Alternative | 10 | 3 | ATG | TAG | riboCIRC,TransCirc | No |
chr3|47422441|47427667|-|6|circRNA|SCAP|ENST00000428413.5|10,9,8,7,6,5 | circSCAP(10,9,8,7,6,5) | SCAP | LVHHEEHGHGAGHHPHRLLHPSARHPALGSGAWRSCVCK | HPALGSGAWR | No | Junction | Junction | 10 | 2 | CTG | TGA | TransCirc | No |
chr3|47422569|47423932|-|1|ciRNA|SCAP|ENST00000428413.5|9 | ciSCAP(9) | SCAP | LGIWGSRENEKRESLALEAWSLEPLLPRHPMSVRNGAVGSRPFIQTSVSLCDKPGPVLDMELGRDGAKLSLPSKSTEP | ESLALEAWSLEPLLPR | No | Alternative | Alternative | 16 | 1 | CTG | TAG | NA | No |
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