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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|97428459|97441875|+|5|circRNA|TDRD7|ENST00000355295.4|2,3,4,5,6 | circTDRD7(2,3,4,5,6) | TDRD7 | MAFGYLSFHIFTKSYIKKTLIKEFYNSLNTGLIFARQRCWKEIWFQRCYELFCSLIRME | CYELFCSLIR | No | Alternative | Junction | 10 | 1 | ATG | TAG | TransCirc | No |
chr9|98087441|98088005|-|1|circRNA|TRIM14|ENST00000375098.7|6 | circTRIM14(6) | TRIM14 | LGLPRRPAQPPAAPRRPRPARRLPGLRGRRPRLLRRDGRHEPPAYLPRHVPGAALPGPAALGGGHQHPPAALGARTGVTASRRAHAHAGS | HVPGAALPGPAALGGGHQHPPAALGAR | No | Alternative | Junction | 27 | 2 | CTG | TGA | TransCirc | No |
chr9|98087441|98088005|-|1|circRNA|TRIM14|ENST00000375098.7|6 | circTRIM14(6) | TRIM14 | LVGGRGLRLPSAPRGLGRRPPGLQPPVLVPQALRP | RPPGLQPPVLVPQALRP | No | Alternative | Alternative | 17 | 2 | CTG | TGA | NA | No |
chr9|98091908|98109984|-|4|circRNA|TRIM14|ENST00000375098.7|5,4,3,2 | circTRIM14(5,4,3,2) | TRIM14 | LPALRPFQHQARYLVENQPLTRAIAIAEINSAKNV | AIAIAEINSAK | No | Junction | Junction | 11 | 2 | CTG | TAA | TransCirc | No |
chr9|98091908|98109984|-|4|circRNA|TRIM14|ENST00000375098.7|5,4,3,2 | circTRIM14(5,4,3,2) | TRIM14 | LPALRPFQHQARYLVENQPLTRAIAIAEINSAKNV | YLVENQPLTRAIAIAEINSAK | No | Junction | Junction | 21 | 2 | CTG | TAA | TransCirc | No |
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