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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|71716553|71717947|-|1|ciRNA|TMEM2|ENST00000377044.8|13 | ciTMEM2(13) | TMEM2 | LYNFRSGLMHVELRFSVQQSRKMCVCIFFSGTEISFLAFHIISEFFHPKN | FSVQQSR | No | Alternative | Alternative | 7 | 1 | TTG | TGA | NA | No |
chr9|71746200|71750385|-|2|circRNA|TMEM2|ENST00000377044.8|3,2 | circTMEM2(3,2) | TMEM2 | LPRSKSSSQELGSRTRFCKASCYQGGRYAPSDLRRHRAFYSHSGWSNSVSCMPLIPGDTPLLSSNLRMEIVVTHLAMFQGRLSHCVPLLLQRVKLQPNLPPSDEKTGQPSHSHLKNSKPREKVKSKRDTKILSFVLLLLVSHFLLHLQSF | YAPSDLR | No | Alternative | Junction | 7 | 2 | TTG | TAG | TransCirc | No |
chr9|72195499|72213991|+|4|circRNA|GDA|ENST00000545168.5|2,3,4,5 | circGDA(2,3,4,5) | GDA | MTLFQNTRRPLRNRSRKLRDSVFRRSISTGKTGQRMVLQAV | RSISTGK | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
chr9|76629191|76644909|-|5|circRNA|PRUNE2|NM_001308049|9,8,7,6,5 | circPRUNE2(9,8,7,6,5) | PRUNE2 | LIPMDCIHIPESIIKSHSQQRFWPRVRVYSRIYGRRGTGGQPALEDSGHWRTRAAH | GTGGQPALEDSGHWR | No | Alternative | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
chr9|76703336|76713721|-|3|circRNA|PRUNE2|NM_001308047|9,8,7 | circPRUNE2(9,8,7) | PRUNE2 | LVQSANHRRVRAEAGLARMQLRCRLSPMTMNGKCFHHSLFRKT | LVQSANHR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
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