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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|134048082|134053590|-|5|circRNA|BRD3|ENST00000303407.11|6,5,4,3,2 | circBRD3(6,5,4,3,2) | BRD3 | LPAGVSRPRRCQTPSRPKWWPGGRVVAAPSSLPRRTWRTARCPSTQARRASCRSTYATATASSGRCYPRSTRPTPGPSTSQWMPRPWSCTTTTTSSSTRWTSAP | VVAAPSSLPR | No | Alternative | Alternative | 10 | 2 | CTG | TGA | TransCirc | No |
chr9|134048082|134053590|-|5|circRNA|BRD3|ENST00000303407.11|6,5,4,3,2 | circBRD3(6,5,4,3,2) | BRD3 | LRQHPQGDAIQEARGLRLALLQASGCRGPGAARLPRHHQAPDGPQHRETVAWLGPEMGRRAFSGSVEAARASPSRCCDRK | ETVAWLGPEMGRR | No | Junction | Junction | 13 | 3 | CTG | TGA | TransCirc | No |
chr9|136334446|136340993|+|8|circRNA|GPSM1|ENST00000440944.5|2,3,4,5,6,7,8,9 | circGPSM1(2,3,4,5,6,7,8,9) | GPSM1 | LTWPAMRPRDGGVLPRAGAGGRASVQGGRLQDRRGLL | ASVQGGRLQDR | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr9|136334446|136340993|+|8|circRNA|GPSM1|ENST00000440944.5|2,3,4,5,6,7,8,9 | circGPSM1(2,3,4,5,6,7,8,9) | GPSM1 | LTWPAMRPRDGGVLPRAGAGGRASVQGGRLQDRRGLL | DGGVLPR | No | Alternative | Junction | 7 | 2 | CTG | TGA | TransCirc | No |
chr9|136394248|136395770|-|4|circRNA|SNAPC4|NM_003086|6,5,4,3 | circSNAPC4(6,5,4,3) | SNAPC4 | LLRKSVVSDRLQRLLQPKLLKKKKGGAKPAMTRTIPRIKPSLKTQKPACS | KGGAKPAMTR | No | Alternative | Junction | 10 | 3 | TTG | TGA | TransCirc | No |
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