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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|110136126|110138539|+|1|circRNA|PALM2-AKAP2|NM_007203|8 | circPALM2-AKAP2(8) | PALM2-AKAP2 | LKLRLSAQKSLRACLSHLRCLLLFKRKGMYYQRFCLLKTGRSGKGGPPSHCQLCSPVARLTWRRPGPKEAISASTRRQLS | EAISASTR | No | Alternative | Alternative | 8 | 2 | CTG | TGA | TransCirc | No |
chr9|110136126|110138539|+|1|circRNA|PALM2-AKAP2|NM_007203|8 | circPALM2-AKAP2(8) | PALM2-AKAP2 | LKLRLSAQKSLRACLSHLRCLLLFKRKGMYYQRFCLLKTGRSGKGGPPSHCQLCSPVARLTWRRPGPKEAISASTRRQLS | GGPPSHCQLCSPVAR | No | Alternative | Alternative | 15 | 2 | CTG | TGA | TransCirc | No |
chr9|110136126|110138539|+|1|circRNA|PALM2-AKAP2|NM_007203|8 | circPALM2-AKAP2(8) | PALM2-AKAP2 | LSGDLQKTVVPQPPRDRNPPVPWRPHRQQEARATQPLRGRKGPTASLLNVGPYLNCGLRMENLRAPGLSSLWSRMMTMGFWISSQDLSMSP | APGLSSLWSR | No | Alternative | Alternative | 10 | 2 | CTG | TGA | TransCirc | No |
chr9|110136126|110138539|+|1|circRNA|PALM2-AKAP2|NM_007203|8 | circPALM2-AKAP2(8) | PALM2-AKAP2 | MISAWTTSVTAGHPMRQPMPSRKIHWLIFLCPRHHKLTTPQRAEEKASPSHLVIMVSIPLPPRWGTLRWLMTPWSIRLASWCRMPFNKP | MISAWTTSVTAGHPMRQPMPSR | No | Alternative | Alternative | 22 | 2 | ATG | TAG | TransCirc | No |
chr9|111375229|111376475|-|1|ciRNA|KIAA0368|ENST00000338205.9|36 | ciKIAA0368(36) | KIAA0368 | LLLSGINNSPNTRNSWSKFVLQETTTYQELSINLHL | LLLSGINNSPNTR | No | Alternative | Alternative | 13 | 1 | CTG | TAG | NA | No |
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