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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|17988596|17995909|-|3|circRNA|SERGEF|ENST00000527494.5|9,8,7 | circSERGEF(9,8,7) | SERGEF | MKRSLPSGVDGHTWLLRQRVASCSSGGLVWHHVDDGCALGRLFHCFSQQRNQAE | LFHCFSQQR | No | Alternative | Junction | 9 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|18291441|18292019|-|1|circRNA|HPS5|ENST00000396253.7|15 | circHPS5(15) | HPS5 | LVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKGPSYRTLWFYLNPSL | LSYSNSPSVWDTFIEGLKGPSYR | No | Junction | Junction | 23 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr11|18291441|18292019|-|1|circRNA|HPS5|ENST00000396253.7|15 | circHPS5(15) | HPS5 | LVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKGPSYRTLWFYLNPSL | TLWFYLNPSL | No | Alternative | Junction | 10 | 2 | CTG | TGA | riboCIRC,TransCirc | No |
chr11|18295019|18306347|-|8|circRNA|HPS5|ENST00000396253.7|13,12,11,10,9,8,7,6 | circHPS5(13,12,11,10,9,8,7,6) | HPS5 | LENWKQGKRWRIWSLFLSWKMFWGPATSDILCSPRL | IWSLFLSWKMFWGPATSDILCSPR | No | Alternative | Alternative | 24 | 1 | TTG | TAG | TransCirc | No |
chr11|18341260|18341607|+|2|circRNA|GTF2H1|NM_001142307|7,8 | circGTF2H1(7,8) | GTF2H1 | MSKNEICRKCSPQHDREGILDTFFPVPLFSQGSAEYRVKGSLCRMCQNR | CSPQHDREGILDTFFPVPLFSQGSAEYR | No | Alternative | Junction | 28 | 1 | ATG | TGA | TransCirc | No |
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