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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|13403167|13421838|-|6|circRNA|BTBD10|NM_001297742|7,6,5,4,3,2 | circBTBD10(7,6,5,4,3,2) | BTBD10 | MVLVGDMRDQEIDEGQVTDHEIHLMKERSLSSLLVLEM | MVLVGDMR | No | Alternative | Alternative | 8 | 3 | ATG | TGA | TransCirc | No |
chr11|134158500|134159891|-|1|ciRNA|NCAPD3|ENST00000534532.6|29 | ciNCAPD3(29) | NCAPD3 | LLLTVLRNAGRSLVGKTNEHKVAYSFFSSVMPQHLQVAAFS | NAGRSLVGK | No | Alternative | Alternative | 9 | 1 | CTG | TAG | NA | No |
chr11|134184636|134194738|-|6|circRNA|NCAPD3|ENST00000534532.6|19,18,17,16,15,14 | circNCAPD3(19,18,17,16,15,14) | NCAPD3 | LNGFQWSLEVISSAVDALQRLCRASAETPAEEQKDVSWQC | ASAETPAEEQK | No | Junction | Junction | 11 | 3 | CTG | TGA | TransCirc | No |
chr11|134184636|134194738|-|6|circRNA|NCAPD3|ENST00000534532.6|19,18,17,16,15,14 | circNCAPD3(19,18,17,16,15,14) | NCAPD3 | LNGFQWSLEVISSAVDALQRLCRASAETPAEEQKDVSWQC | ASAETPAEEQKDVSWQC | No | Junction | Junction | 17 | 3 | CTG | TGA | TransCirc | No |
chr11|13982846|14041654|+|2|circRNA|SPON1|NM_006108|2,3 | circSPON1(2,3) | SPON1 | MSNCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILNNTFSCSSLLLQRIHINCPQREQRG | IQVFWIAPPAGTGCVILNNTFSCSSLLLQRIHINCPQR | No | Junction | Junction | 38 | 1 | ATG | TGA | TransCirc | No |
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