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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|118468774|118474315|+|2|circRNA|KMT2A|NM_001197104|2,3 | circKMT2A(2,3) | KMT2A | LNWKSPRKSGKTRKEHLHLQKKIRQLSDKALEGLSQLGLFLLQKGQMQPLLSNSYRGQKRGLKRKLKKKQLSCREER | GQMQPLLSNSYR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | TransCirc | No |
chr11|118581245|118584644|+|4|circRNA|ARCN1|NM_001655|2,3,4,5 | circARCN1(2,3,4,5) | ARCN1 | LKVKPSCPLVWASVLLKQPKCMLHPLIWKGAVGSSGLHKSRKGYCFSTVCGNDPNSD | AVGSSGLHK | No | Alternative | Junction | 9 | 3 | CTG | TGA | NA | No |
chr11|118581245|118584644|+|4|circRNA|ARCN1|NM_001655|2,3,4,5 | circARCN1(2,3,4,5) | ARCN1 | LKVKPSCPLVWASVLLKQPKCMLHPLIWKGAVGSSGLHKSRKGYCFSTVCGNDPNSD | AVGSSGLHKSR | No | Alternative | Junction | 11 | 3 | CTG | TGA | NA | No |
chr11|118581245|118584644|+|4|circRNA|ARCN1|NM_001655|2,3,4,5 | circARCN1(2,3,4,5) | ARCN1 | LKVKPSCPLVWASVLLKQPKCMLHPLIWKGAVGSSGLHKSRKGYCFSTVCGNDPNSD | GAVGSSGLHK | No | Alternative | Junction | 10 | 3 | CTG | TGA | NA | No |
chr11|119025330|119025966|-|1|ciRNA|SLC37A4|ENST00000525102.5|8 | ciSLC37A4(8) | SLC37A4 | LDRSSVSGFSSSTLGLVFFSSLCSSRMLLSGLWLFTLSRSSQALQSMRCLKDISGFSPGLSHLCPTLLPYP | SSQALQSMR | No | Alternative | Alternative | 9 | 1 | TTG | TAG | NA | No |
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