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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|9931890|9936627|-|5|circRNA|LZIC|NM_001316975|7,6,5,4,3 | circLZIC(7,6,5,4,3) | LZIC | LQMMRPSCQQMQVLYSASLRKSLQTLRLKWLPEERQRQAN | LQMMRPSCQQMQVLYSASLRK | No | Alternative | Junction | 21 | 2 | CTG | TAA | riboCIRC,TransCirc | No |
chr1|9931890|9936627|-|5|circRNA|LZIC|NM_001316975|7,6,5,4,3 | circLZIC(7,6,5,4,3) | LZIC | LQMMRPSCQQMQVLYSASLRKSLQTLRLKWLPEERQRQAN | WLPEERQR | No | Alternative | Junction | 8 | 2 | CTG | TAA | riboCIRC,TransCirc | No |
chr10|100495384|100516997|-|18|circRNA|SEC31B|ENST00000370345.7|19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circSEC31B(19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | SEC31B | MLKVLLSWANSLPLSPSPGLLWELPSTLKRHHLTDWDPSLLTSGLRAMSVFCHLQDRP | HHLTDWDPSLLTSGLR | No | Junction | Junction | 16 | 2 | ATG | TGA | TransCirc | No |
chr10|100505360|100506420|-|3|circRNA|SEC31B|ENST00000370345.7|10,9,8 | circSEC31B(10,9,8) | SEC31B | LQVPEQVAQAPLIPPLKKPPKWIRRPTGVSFAGDLVSVMEPG | RPTGVSFAGDLVSVMEPG | No | Junction | Junction | 18 | 1 | CTG | TGA | TransCirc | No |
chr10|100972528|100973609|+|3|circRNA|SEMA4G|ENST00000519649.5|2,3,4 | circSEMA4G(2,3,4) | SEMA4G | LGSLPRDAKQMSSKREKQPENGPQKTRTSSTVGGRVTPSVTYNPSRTSQLPLTMEFAFDAERHVIPPSF | TRTSSTVGGR | No | Alternative | Junction | 10 | 3 | CTG | TGA | NA | No |
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