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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|94498601|94499614|+|4|circRNA|ABCD3|NM_002858|17,18,19,20 | circABCD3(17,18,19,20) | ABCD3 | MSSWVISLNVKEAGTVFRIGWTYSVVEKSKEWRFDLGLMF | EAGTVFR | No | Alternative | Junction | 7 | 2 | ATG | TAA | TransCirc | No |
chr1|946569|948130|-|1|ciRNA|NOC2L|NM_015658|14 | ciNOC2L(14) | NOC2L | LALVAGIRCADYRSVQCGEEGSAHMSHNWSEAYPDRGVCMCVYSHTATHVTCTEPGPPFWGALTAGATASVPPMSSWVVIPGIGASLLLDSRAQGRGLG | LALVAGIR | No | Alternative | Alternative | 8 | 1 | CTG | TAG | NA | No |
chr1|946569|948130|-|1|ciRNA|NOC2L|NM_015658|14 | ciNOC2L(14) | NOC2L | LGAGLGSGLRTLGAQQPPPQVGTTRLIFASGLGLSMPTLAQAGTLIAHFPRPSRVWGVGGVASQVAGRPGLPRQIPHISLIGRPSLPR | LGAGLGSGLRTLGAQQPPPQVGTTR | No | Alternative | Alternative | 25 | 1 | TTG | TAA | NA | No |
chr1|946569|948130|-|1|ciRNA|NOC2L|NM_015658|14 | ciNOC2L(14) | NOC2L | MHRAGTPFLGGTHSRGHSLCSSHVLLGGDTWHWGISASGLKGPGSGSGVGVRKCFW | GPGSGSGVGVR | No | Alternative | Alternative | 11 | 1 | ATG | TGA | NA | No |
chr1|94824492|94845464|+|7|circRNA|SLC44A3|ENST00000446120.6|2,3,4,5,6,7,8 | circSLC44A3(2,3,4,5,6,7,8) | SLC44A3 | LGPLGGCAAEPGNCRCLSWATRWWLEPREDSSLAMTALATCVARRTPPWKGPLFQGRT | EDSSLAMTALATCVAR | No | Alternative | Junction | 16 | 3 | CTG | TGA | TransCirc | No |
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