top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|84563256|84570720|-|5|circRNA|CTBS|ENST00000370630.5|6,5,4,3,2 | circCTBS(6,5,4,3,2) | CTBS | LETYGIKISGLLIITIKSLCLMLDRKLGNLMIGHRLQLWQHLENMTQNLCATLIQKEPE | LGNLMIGHR | No | Alternative | Junction | 9 | 2 | CTG | TAG | TransCirc | No |
chr1|84563256|84570720|-|5|circRNA|CTBS|ENST00000370630.5|6,5,4,3,2 | circCTBS(6,5,4,3,2) | CTBS | LETYGIKISGLLIITIKSLCLMLDRKLGNLMIGHRLQLWQHLENMTQNLCATLIQKEPE | LGNLMIGHRLQLWQHLENMTQNLCATLIQK | No | Alternative | Junction | 30 | 2 | CTG | TAG | TransCirc | No |
chr1|85164525|85190752|-|5|circRNA|SYDE2|ENST00000341460.5|6,5,4,3,2 | circSYDE2(6,5,4,3,2) | SYDE2 | LIQKNLQVLWILKNTLKFFITYSNSGQIYLKMPMGLQ | FFITYSNSGQIYLK | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
chr1|85164525|85190752|-|5|circRNA|SYDE2|ENST00000341460.5|6,5,4,3,2 | circSYDE2(6,5,4,3,2) | SYDE2 | LIQKNLQVLWILKNTLKFFITYSNSGQIYLKMPMGLQ | FFITYSNSGQIYLKMPMGLQ | No | Junction | Junction | 20 | 2 | CTG | TGA | TransCirc | No |
chr1|86715723|86735179|+|7|circRNA|SH3GLB1|ENST00000616170.4|2,3,4,5,6,7,8 | circSH3GLB1(2,3,4,5,6,7,8) | SH3GLB1 | LNDFVEAQMTYYAQCYQYMLDLQKQLGSSQKKSLARLRRQNWMLT | QLGSSQK | No | Alternative | Junction | 7 | 1 | CTG | TAG | TransCirc | No |
Page 1 of 1
bottom of page