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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|53266472|53271346|-|3|circRNA|LRP8|ENST00000306052.10|9,8,7 | circLRP8(9,8,7) | LRP8 | LVKRNYSRLIPMLKNVVALDVEVATNRIYWCDLSYRKIYRAERVSAQQWRLLTHLH | AERVSAQQWR | No | Alternative | Junction | 10 | 3 | CTG | TGA | TransCirc | No |
chr1|53594107|53600278|-|2|circRNA|GLIS1|NM_147193|3,2 | circGLIS1(3,2) | GLIS1 | MSFQSSLGLTSRACRPPIPCLSCRLAQALEAWGWAWQAGWWPGGRRAAGWTAVQPMSSRRSWCGTSRRATSTSARARTSPASGLAACAATSPSTPATSCSSTCECTRARSPTSACEWELRTPYPGLREEPAGPGPC | ATSTSARAR | No | Alternative | Junction | 9 | 3 | ATG | TGA | TransCirc | No |
chr1|53789132|53835620|-|14|circRNA|NDC1|ENST00000371429.3|15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circNDC1(15,14,13,12,11,10,9,8,7,6,5,4,3,2) | NDC1 | MHIWALEGFGLEDSCKYCLVSAISTHLHHSIYNFQQD | MHIWALEGFGLEDSCK | No | Junction | Junction | 16 | 1 | ATG | TGA | TransCirc | No |
chr1|53807655|53825936|-|4|circRNA|NDC1|ENST00000371429.3|8,7,6,5 | circNDC1(8,7,6,5) | NDC1 | LAVWCLSPDDLVCLMDTLQNLCHRALVALLRKPA | ALVALLRKPA | No | Alternative | Junction | 10 | 1 | CTG | TAA | TransCirc | No |
chr1|53807655|53825936|-|4|circRNA|NDC1|ENST00000371429.3|8,7,6,5 | circNDC1(8,7,6,5) | NDC1 | LAVWCLSPDDLVCLMDTLQNLCHRALVALLRKPA | LAVWCLSPDDLVCLMDTLQNLCHR | No | Alternative | Junction | 24 | 1 | CTG | TAA | TransCirc | No |
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