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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|230843353|230843896|-|1|circRNA|C1orf198|NM_001136495|3 | circC1orf198(3) | C1orf198 | LSRPSAVHCTRLPPPSSRGSCHLLMSGRTMGKTPCSRNPSLHRVRWSSVSPPYPSRSRATAPPPASPDHCPKLPRAPRPSSPPKAAGPPAWTPWAPPGRRRKRHSGRSMLSGPEGRGLRPSSSR | SMLSGPEGRGLRPSSSR | No | Alternative | Junction | 17 | 2 | CTG | TGA | TransCirc | No |
chr1|231347796|231351571|+|2|circRNA|SPRTN|NM_032018|3,4 | circSPRTN(3,4) | SPRTN | MRWMSIGDTGGAAMGRASTGHRITAMSNELLTGNPLLMTIGGLSTRKPVEALT | WMSIGDTGGAAMGR | No | Alternative | Alternative | 14 | 2 | ATG | TAA | TransCirc | No |
chr1|232425588|232461161|-|9|circRNA|SIPA1L2|ENST00000366630.5|17,16,15,14,13,12,11,10,9 | circSIPA1L2(17,16,15,14,13,12,11,10,9) | SIPA1L2 | LEGWPSPREPPRGDLQSSRGHSDPRADDRPAPYFCDCEGGHHPAP | GDLQSSRGHSDPR | No | Alternative | Alternative | 13 | 1 | CTG | TGA | TransCirc | No |
chr1|232425588|232461161|-|9|circRNA|SIPA1L2|ENST00000366630.5|17,16,15,14,13,12,11,10,9 | circSIPA1L2(17,16,15,14,13,12,11,10,9) | SIPA1L2 | LEGWPSPREPPRGDLQSSRGHSDPRADDRPAPYFCDCEGGHHPAP | LEGWPSPR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr1|232425588|232461161|-|9|circRNA|SIPA1L2|ENST00000366630.5|17,16,15,14,13,12,11,10,9 | circSIPA1L2(17,16,15,14,13,12,11,10,9) | SIPA1L2 | LEGWPSPREPPRGDLQSSRGHSDPRADDRPAPYFCDCEGGHHPAP | LEGWPSPREPPR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | TransCirc | No |
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