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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|47440322|47599196|+|3|circRNA|SPIDR|ENST00000297423.8|8,9,10 | circSPIDR(8,9,10) | SPIDR | LDPWAQRSKTAHPNQHSPEGFSPGCGGKPGSCLVARSWSPSGGAKSVFSSQQRQHQGSAGGQLRTHRPSWNSVENLVY | THRPSWNSVENLVY | No | Junction | Junction | 14 | 3 | CTG | TAA | TransCirc | No |
chr8|47673800|47713641|+|6|circRNA|SPIDR|ENST00000297423.8|11,12,13,14,15,16 | circSPIDR(11,12,13,14,15,16) | SPIDR | LLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQEPAFWYKMPVECSVKCTWSSPCRRQDSWKGSLAAWWE | CTWSSPCRR | No | Alternative | Junction | 9 | 3 | TTG | TGA | TransCirc | No |
chr8|47782161|47794501|-|7|circRNA|PRKDC|ENST00000314191.6|80,79,78,77,76,75,74 | circPRKDC(80,79,78,77,76,75,74) | PRKDC | LKDLLLNTMSQEEKAAYLRSLPFPAGSSSAGSATWWPYWTKTKPLLFSTLWKKSLITTRRLLFIPSS | TKPLLFSTLWKK | No | Alternative | Junction | 12 | 2 | TTG | TAA | TransCirc | No |
chr8|47785112|47794501|-|4|circRNA|PRKDC|ENST00000314191.6|77,76,75,74 | circPRKDC(77,76,75,74) | PRKDC | LRMKLSDFNDITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPDLFRSLLAVHQLDQPHGGLTGQRPSRCCSALCGRNH | SLLAVHQLDQPHGGLTGQRPSR | No | Alternative | Junction | 22 | 1 | CTG | TGA | TransCirc | No |
chr8|47794289|47858986|-|28|circRNA|PRKDC|ENST00000314191.6|74,73,72,71,70,69,68,67,66,65,64,63,62,61,60,59,58,57,56,55,54,53,52,51,50,49,48,47 | circPRKDC(74,73,72,71,70,69,68,67,66,65,64,63,62,61,60,59,58,57,56,55,54,53,52,51,50,49,48,47) | PRKDC | MVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESYSFKDTSTGHKNKEFVARSSGTPRCMMMCWSWRWTSSIGMSAWRP | EFVARSSGTPR | No | Junction | Junction | 11 | 1 | ATG | TGA | NA | No |
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