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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|154234590|154251653|+|10|circRNA|UBAP2L|NM_001127320|5,6,7,8,9,10,11,12,13,14 | circUBAP2L(5,6,7,8,9,10,11,12,13,14) | UBAP2L | LGHCSLGQSLSFLIMSPPPPRAPLQARLQVACIPARPAFLGDGREEEGSLRPEGWWPDGIQ | LGHCSLGQSLSFLIMSPPPPRAPLQAR | Yes | Alternative | Junction | 27 | 2 | TTG | TGA | TransCirc | No |
chr1|154249238|154251653|+|3|circRNA|UBAP2L|NM_001127320|12,13,14 | circUBAP2L(12,13,14) | UBAP2L | LGHCSLGQSLSFLIMSPPPPRAPLQARLQVACIPARPGEHVRERIW | APLQARLQVACIPARPGEHVR | No | Junction | Junction | 21 | 2 | TTG | TGA | TransCirc | No |
chr1|154601040|154602626|-|1|circRNA|ADAR|NM_001193495|2 | circADAR(2) | ADAR | LESRHRHCHLPSQDSGQGFQYYLPPVPEAGKWTSGVSPGACISEVRGSREGSSILHHVAGVCHREVLIAFPHISRN | WTSGVSPGACISEVRGSR | No | Alternative | Alternative | 18 | 1 | TTG | TGA | NA | No |
chr1|154601040|154602626|-|1|circRNA|ADAR|NM_001193495|2 | circADAR(2) | ADAR | LGKGRPPQHMICLGNLGLRRKKSIEFYTPWQRRASYRKRQEHPLCGKSRSPLRLGTSTAEW | LGKGRPPQHMICLGNLGLR | No | Alternative | Alternative | 19 | 1 | TTG | TAA | NA | No |
chr1|15518109|15518395|-|1|circRNA|CASP9|ENST00000546424.5|2 | circCASP9(2) | CASP9 | LIIDLETRGSQALPLFISCLEDTGQDMLASFLRTNRQAAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDIGSGGFGDVAGRLWISAGSGQAADHRSGDSRESGSSFVHLLLRGHRPGHAGFVSAN | ESGSSFVHLLLR | No | Alternative | Junction | 12 | 1 | CTG | TAA | TransCirc | No |
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