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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|75605149|75621056|-|6|circRNA|SNUPN|ENST00000567134.5|8,7,6,5,4,3 | circSNUPN(8,7,6,5,4,3) | SNUPN | LISDSTGCIQSYQKKKDWERKPSLILEDGRVESGPG | LISDSTGCIQSYQK | No | Alternative | Junction | 14 | 2 | CTG | TAG | TransCirc | No |
chr15|75617407|75621056|-|2|circRNA|SNUPN|ENST00000567134.5|4,3 | circSNUPN(4,3) | SNUPN | MPEDWLKMTGQGWRVRKKIRKMMKKWTLTLSRSYQNTMLIKEDGRVESGPG | MPEDWLK | No | Alternative | Junction | 7 | 3 | ATG | TAG | TransCirc | No |
chr15|76728594|76765638|-|6|circRNA|SCAPER|ENST00000563290.5|17,16,15,14,13,12 | circSCAPER(17,16,15,14,13,12) | SCAPER | LNNRGKKRKKPVRMQPGKELGQHGQWECFFLWYVHGLERCPCRL | ELGQHGQWECFFLWYVHGLER | No | Junction | Junction | 21 | 2 | TTG | TGA | TransCirc | No |
chr15|76728594|76765638|-|6|circRNA|SCAPER|ENST00000563290.5|17,16,15,14,13,12 | circSCAPER(17,16,15,14,13,12) | SCAPER | LNNRGKKRKKPVRMQPGKELGQHGQWECFFLWYVHGLERCPCRL | ELGQHGQWECFFLWYVHGLERCPCR | No | Junction | Junction | 25 | 2 | TTG | TGA | TransCirc | No |
chr15|76728594|76771954|-|8|circRNA|SCAPER|ENST00000563290.5|17,16,15,14,13,12,11,10 | circSCAPER(17,16,15,14,13,12,11,10) | SCAPER | LAVFETIMFELLKYLLSTLIQSVFQLCCKLVHLLYK | LAVFETIMFELLK | No | Alternative | Alternative | 13 | 1 | CTG | TAA | NA | No |
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