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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr15|51766372|51777018|+|4|circRNA|TMOD2|NM_001142885|2,3,4,5 | circTMOD2(2,3,4,5) | TMOD2 | LSLEYTICSTIQSSMKKQPTIKVAKDLSEYSEVSGNWTI | LSLEYTICSTIQSSMKK | No | Alternative | Junction | 17 | 1 | CTG | TAA | TransCirc | No |
chr15|51887588|51893945|+|3|circRNA|TMOD3|NM_014547|4,5,6 | circTMOD3(4,5,6) | TMOD3 | LKRTKENDAHLVEVNLNNIKGKYLSPNRNLYRLLQKKKCLLIQN | GKYLSPNR | No | Alternative | Junction | 8 | 3 | TTG | TAG | TransCirc | No |
chr15|51900154|51902036|+|2|circRNA|TMOD3|NM_014547|8,9 | circTMOD3(8,9) | TMOD3 | LGTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLGFCRNAESEQNFEELKCGVQLYHGSWDSGTD | NAESEQNFEELKCGVQLYHGSWDSGTD | No | Alternative | Junction | 27 | 1 | TTG | TGA | riboCIRC,TransCirc | No |
chr15|51962388|51966504|-|2|circRNA|LEO1|NM_001286430|3,2 | circLEO1(3,2) | LEO1 | MMMKTKVIDRMEGAIIQKQKVLKKHIQMMKNGAEKIKVTSQMMKRYKILMMRRGHKDLMKISCRILTMMRKCRTQMMRRGLSFPMMRDNSYLRRKRLILMMNGR | LILMMNGR | No | Alternative | Alternative | 8 | 1 | ATG | TAG | TransCirc | No |
chr15|52214602|52237646|-|12|circRNA|MYO5C|NM_018728|33,32,31,30,29,28,27,26,25,24,23,22 | circMYO5C(33,32,31,30,29,28,27,26,25,24,23,22) | MYO5C | MKDRVIKKLQDQVKTLSKTIGKEQRKPWAGGEAD | EQRKPWAGGEAD | No | Alternative | Junction | 12 | 1 | ATG | TAG | TransCirc | No |
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