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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr14|50729522|50744365|-|7|circRNA|NIN|ENST00000245441.9|29,28,27,26,25,24,23 | circNIN(29,28,27,26,25,24,23) | NIN | LGFAAAPAASLSDGAQGAVSAASTPAAAGRKDKPAPAGGT | LGFAAAPAASLSDGAQGAVSAASTPAAAGR | No | Alternative | Alternative | 30 | 3 | TTG | TGA | TransCirc | No |
chr14|50915335|50915971|-|2|circRNA|PYGL|ENST00000532462.5|11,10 | circPYGL(11,10) | PYGL | MGAHPEDLRLHQPHSAPGSPGALARGPGGEAAPSTFGNHL | GPGGEAAPSTFGNHL | No | Alternative | Alternative | 15 | 2 | ATG | TGA | TransCirc | No |
chr14|52019060|52020178|-|2|circRNA|NID2|NM_007361|14,13 | circNID2(14,13) | NID2 | MPRPSMPTLGPGSTSPNATSRATSCPYSVMAALVSAGAWTLMVMKFLVPRLHLAPPRLTVDHHQM | FLVPRLHLAPPR | No | Alternative | Junction | 12 | 1 | ATG | TAG | TransCirc | No |
chr14|52019060|52020178|-|2|circRNA|NID2|NM_007361|14,13 | circNID2(14,13) | NID2 | MPRPSMPTLGPGSTSPNATSRATSCPYSVMAALVSAGAWTLMVMKFLVPRLHLAPPRLTVDHHQM | LHLAPPR | No | Alternative | Junction | 7 | 1 | ATG | TAG | TransCirc | No |
chr14|52038746|52038977|-|1|circRNA|NID2|NM_007361|9 | circNID2(9) | NID2 | MVLPHPPEHHLPGVQARPQTPVLPHHPAAERGPGLCLV | GPGLCLV | No | Alternative | Alternative | 7 | 2 | ATG | TAA | TransCirc | No |
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