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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|110503805|110522411|+|9|circRNA|RAD9B|ENST00000409246.5|2,3,4,5,6,7,8,9,10 | circRAD9B(2,3,4,5,6,7,8,9,10) | RAD9B | LARPWNVFQKKQHQEGFILRRLSQTYLHWKTVAALQ | QHQEGFILR | No | Alternative | Alternative | 9 | 3 | CTG | TGA | TransCirc | No |
chr12|111418118|111418877|+|1|circRNA|SH2B3|ENST00000341259.6|2 | circSH2B3(2) | SH2B3 | LAVRPGASAARAAARRAGVAAVHRPLPALLLPRGARRTGAGPRLPGHRPWAPSQGRGVPGARPRPRRPWPAQGPQL | AGVAAVHRPLPALLLPRGAR | No | Alternative | Alternative | 20 | 3 | CTG | TGA | TransCirc | No |
chr12|111418118|111418877|+|1|circRNA|SH2B3|ENST00000341259.6|2 | circSH2B3(2) | SH2B3 | LEPGPGAATRGAEGGGAALQPGRRGLHGQRGTLAAREAGAAPGPGPRWPRPRAGALRPTQARPHHLGLRHERACPAALLALFRALSLPGGGPAGLERVL | AGALRPTQARPHHLGLRHER | No | Junction | Junction | 20 | 3 | CTG | TGA | TransCirc | No |
chr12|111418118|111418877|+|1|circRNA|SH2B3|ENST00000341259.6|2 | circSH2B3(2) | SH2B3 | LEPGPGAATRGAEGGGAALQPGRRGLHGQRGTLAAREAGAAPGPGPRWPRPRAGALRPTQARPHHLGLRHERACPAALLALFRALSLPGGGPAGLERVL | EAGAAPGPGPR | No | Alternative | Junction | 11 | 3 | CTG | TGA | TransCirc | No |
chr12|111418118|111418877|+|1|circRNA|SH2B3|ENST00000341259.6|2 | circSH2B3(2) | SH2B3 | LEPGPGAATRGAEGGGAALQPGRRGLHGQRGTLAAREAGAAPGPGPRWPRPRAGALRPTQARPHHLGLRHERACPAALLALFRALSLPGGGPAGLERVL | GAEGGGAALQPGRR | No | Alternative | Junction | 14 | 3 | CTG | TGA | TransCirc | No |
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