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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|130152735|130180880|-|6|circRNA|ASAP1|NM_001247996|14,13,12,11,10,9 | circASAP1(14,13,12,11,10,9) | ASAP1 | MAEEEVFSQEWDSDHLTCHIQKLRKRKESTQNNMG | MAEEEVFSQEWDSDHLTCHIQK | No | Junction | Junction | 22 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr8|131940498|131979019|+|12|circRNA|EFR3A|ENST00000254624.9|2,3,4,5,6,7,8,9,10,11,12,13 | circEFR3A(2,3,4,5,6,7,8,9,10,11,12,13) | EFR3A | LPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRSMLLLFRFASSLQTPGGQHIP | GIRSMLLLFR | No | Junction | Junction | 10 | 1 | CTG | TGA | TransCirc | No |
chr8|132610165|132661627|-|9|circRNA|LRRC6|ENST00000618342.1|10,9,8,7,6,5,4,3,2 | circLRRC6(10,9,8,7,6,5,4,3,2) | LRRC6 | LVICMPKSQKILLDGMLNTTTVSFFPWRNSRCISKK | ILLDGMLNTTTVSFFPWR | No | Alternative | Junction | 18 | 1 | TTG | TAG | TransCirc | No |
chr8|132794409|132794817|+|2|circRNA|PHF20L1|NM_198513|3,4 | circPHF20L1(3,4) | PHF20L1 | LARWTDCRYYPAKIEAINKEGIHHELKKLTMRRARCWSILSAGVIVMMSGFTGIAIDCDPLRDQH | ARCWSILSAGVIVMMSGFTGIAIDCDPLR | No | Alternative | Junction | 29 | 1 | CTG | TAA | TransCirc | No |
chr8|132794409|132794817|+|2|circRNA|PHF20L1|NM_198513|3,4 | circPHF20L1(3,4) | PHF20L1 | LARWTDCRYYPAKIEAINKEGIHHELKKLTMRRARCWSILSAGVIVMMSGFTGIAIDCDPLRDQH | CWSILSAGVIVMMSGFTGIAIDCDPLR | No | Alternative | Junction | 27 | 1 | CTG | TAA | TransCirc | No |
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