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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|71075158|71147338|-|7|circRNA|SHANK2|NM_012309|8,7,6,5,4,3,2 | circSHANK2(8,7,6,5,4,3,2) | SHANK2 | LQVRARAAPGAPAVLRGRHECPECLGEHGLAHLRPLQPDTGSHAAQPNIQRGRDGPELLRLLRGVGVRQLQRRDHL | GRDGPELLR | No | Alternative | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
chr11|71075158|71147338|-|7|circRNA|SHANK2|NM_012309|8,7,6,5,4,3,2 | circSHANK2(8,7,6,5,4,3,2) | SHANK2 | LQVRARAAPGAPAVLRGRHECPECLGEHGLAHLRPLQPDTGSHAAQPNIQRGRDGPELLRLLRGVGVRQLQRRDHL | HECPECLGEHGLAHLRPLQPDTGSHAAQPNIQR | No | Junction | Junction | 33 | 3 | CTG | TGA | TransCirc | No |
chr11|71092421|71119032|-|5|circRNA|SHANK2|NM_012309|7,6,5,4,3 | circSHANK2(7,6,5,4,3) | SHANK2 | LVHPQIIKTVTASPRCITQPSSEVIPTAASFSCTNTPLCAAKMRTAGTRSTRNAFDLTRMPQCGLQSSGSCVH | TVTASPR | No | Alternative | Junction | 7 | 2 | TTG | TAA | TransCirc | No |
chr11|71109940|71119032|-|3|circRNA|SHANK2|NM_012309|5,4,3 | circSHANK2(5,4,3) | SHANK2 | LKKCMDHIQHRLVEKITKMLDRGLDPNFHDPETGEMHSI | GLDPNFHDPETGEMHSI | No | Junction | Junction | 17 | 1 | CTG | TAA | TransCirc | No |
chr11|72692789|72693324|-|1|ciRNA|ARAP1|ENST00000495878.5|15 | ciARAP1(15) | ARAP1 | LGSAPGWAPVHLNVLRDSPWSASGNIPVTGSQDGTAVGENCRLSRPLLLWPWTATLVCPVAPLSPGTRMPSHHSMPMLCLTVPVPYHCIHRNLLLDDSPKLCMHALSYRMSYASRATLLPHSVHMQVFSQPRLHLTPSTFCTYMPYTHPNPTHHCTCCPGSRPGTSSITLILYQVSGPAGFCPRVGTCTPECAQRFPLVCKWKYSRYRLSGWHSSGGEL | LCMHALSYR | No | Alternative | Junction | 9 | 2 | CTG | TAG | NA | No |
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