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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr2|11556453|11566656|+|3|circRNA|GREB1|NM_014668|2,3,4 | circGREB1(2,3,4) | GREB1 | LSPFPTSPWMSLRAFSSWGSSPPACRTISWCAPLTRGSCQMTMATMLFL | TISWCAPLTRGSCQMTMATMLFL | No | Alternative | Alternative | 23 | 1 | TTG | TAG | TransCirc | No |
chr2|119311621|119339971|-|4|circRNA|C2orf76|ENST00000409466.6|6,5,4,3 | circC2orf76(6,5,4,3) | C2orf76 | LSLEDDERLLLKEDSTLKAAGIGISSHGSWRSDHHSSPHPFL | AAGIGISSHGSWR | No | Junction | Junction | 13 | 1 | TTG | TGA | TransCirc | No |
chr2|119370802|119372216|+|1|ciRNA|DBI|ENST00000355857.7|3 | ciDBI(3) | DBI | LKRPKPISATRVSRTSKVTTMTVSYLSGGWHLSPKAHNGHSPRTGGGRRCPADGRQILASPTRLSEHSCLWSIHFGPGSVDTVSCN | AHNGHSPRTGGGR | No | Alternative | Alternative | 13 | 2 | CTG | TAG | NA | No |
chr2|119370802|119372216|+|1|ciRNA|DBI|ENST00000355857.7|3 | ciDBI(3) | DBI | LSLRDTFSVLSTAARRQRFVSFPSKKQPLLVRVPETFLIASLWGEEGAWLCFFTASLTALEDRSPKQRH | DTFSVLSTAAR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | NA | No |
chr2|119900717|119952129|+|10|circRNA|PTPN4|ENST00000263708.6|10,11,12,13,14,15,16,17,18,19 | circPTPN4(10,11,12,13,14,15,16,17,18,19) | PTPN4 | LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNGSE | ASCERHSGELMLLVRPNG | No | Alternative | Junction | 18 | 1 | CTG | TAA | TransCirc | No |
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