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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|31907459|31913522|-|5|circRNA|TRAPPC8|ENST00000283351.8|9,8,7,6,5 | circTRAPPC8(9,8,7,6,5) | TRAPPC8 | LTYVFWCSIMIWLTVAIILQRKIFLMIKQCFMQLVP | IFLMIKQCFMQLVP | No | Alternative | Alternative | 14 | 3 | CTG | TGA | NA | No |
chr18|32270216|32288203|-|2|circRNA|GAREM|NM_001242409|5,4 | circGAREM(5,4) | GAREM | LLCAAEQQDPPHALSFALDCPQVQPPRTPGEGRELARNPGPSLARYLPRTVRHR | YLPRTVR | No | Alternative | Alternative | 7 | 2 | TTG | TGA | TransCirc | No |
chr18|36122051|36127016|-|4|circRNA|SLC39A6|NM_012319|5,4,3,2 | circSLC39A6(5,4,3,2) | SLC39A6 | LLSPRPLRKLVRIGNLALMLTWQFPHGNIIYNSFSTAMEKIILCQLKGSENYFKI | IGNLALMLTWQFPHGNIIYNSFSTAMEK | No | Alternative | Alternative | 28 | 2 | CTG | TAG | TransCirc | No |
chr18|36122051|36127016|-|4|circRNA|SLC39A6|NM_012319|5,4,3,2 | circSLC39A6(5,4,3,2) | SLC39A6 | MTTTITQTTSITQTMSVTQTMSITQSTSITLTMIITLTIIMLLLVKISEKLFAQTMTQIVQVKILETARGKELTDQNMPVVEGMSRTVLVLVK | GKELTDQNMPVVEGMSR | No | Alternative | Alternative | 17 | 2 | ATG | TGA | TransCirc | No |
chr18|36195256|36200324|+|3|circRNA|MOCOS|NM_017947|2,3,4 | circMOCOS(2,3,4) | MOCOS | LPGARLLSNWWQRPFHGCPRAQRAVGVASVTSPTATPP | AVGVASVTSPTATPP | No | Alternative | Alternative | 15 | 3 | CTG | TAG | TransCirc | No |
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