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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|99618524|99621574|+|3|circRNA|ZSCAN25|ENST00000481424.5|2,3,4 | circZSCAN25(2,3,4) | ZSCAN25 | LKMLKEHPEMAEAPQQQLGIPVVKLEKELPWGRGREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPREFYAWIREHGPESGKALAAMVEDLTERALEAKAVGEEGIQVWRPWRGQGMLKNPKI | ALEAKAVGEEGIQVWRPWR | No | Alternative | Alternative | 19 | 2 | CTG | TGA | NA | No |
chr7|99618524|99621574|+|3|circRNA|ZSCAN25|ENST00000481424.5|2,3,4 | circZSCAN25(2,3,4) | ZSCAN25 | LMHEFSFLFTSSLMSWGRAQLIFPSSPLKLEWFFSWFSF | AQLIFPSSPLK | No | Alternative | Alternative | 11 | 1 | CTG | TAG | TransCirc | No |
chr7|99618524|99621574|+|3|circRNA|ZSCAN25|ENST00000481424.5|2,3,4 | circZSCAN25(2,3,4) | ZSCAN25 | LSSVAEARVAHQGADPGAAGAGAVPHYPAPRVLRLDPGAWPREWQGPGRHGGGPDRKSTGGQGGG | VLRLDPGAWPR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | NA | No |
chr7|99618524|99621574|+|3|circRNA|ZSCAN25|ENST00000481424.5|2,3,4 | circZSCAN25(2,3,4) | ZSCAN25 | MQKGLKPLFGHEGRGLAIFPLWASGKKKAVVIVFGVPHRPDPALDRDASGKAENPTWGIFFRKRVVHGSTVSLWLIGLL | AENPTWGIFFR | No | Alternative | Alternative | 11 | 1 | ATG | TAA | NA | No |
chr7|99672933|99674532|-|1|ciRNA|CYP3A5|NM_000777|3 | ciCYP3A5(3) | CYP3A5 | LQQLFPVRGARGLVRAVDEVQWCVCSLEASGRKLCLFVLLHLLPSSPQNPQR | GARGLVR | No | Alternative | Alternative | 7 | 1 | TTG | TGA | NA | No |
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