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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|23515855|23516423|+|2|circRNA|C18orf8|ENST00000615148.4|4,5 | circC18orf8(4,5) | C18orf8 | MSKLPKFEIELPAAPKSTKPSLSERDIAMATMYYQRNGV | DIAMATMYYQR | No | Junction | Junction | 11 | 1 | ATG | TGA | TransCirc | No |
chr18|23515855|23516423|+|2|circRNA|C18orf8|ENST00000615148.4|4,5 | circC18orf8(4,5) | C18orf8 | MSKLPKFEIELPAAPKSTKPSLSERDIAMATMYYQRNGV | DIAMATMYYQRNGV | No | Junction | Junction | 14 | 1 | ATG | TGA | TransCirc | No |
chr18|23515855|23516423|+|2|circRNA|C18orf8|ENST00000615148.4|4,5 | circC18orf8(4,5) | C18orf8 | MSKLPKFEIELPAAPKSTKPSLSERDIAMATMYYQRNGV | STKPSLSERDIAMATMYYQR | No | Junction | Junction | 20 | 1 | ATG | TGA | TransCirc | No |
chr18|23551626|23573574|-|9|circRNA|NPC1|ENST00000269228.9|10,9,8,7,6,5,4,3,2 | circNPC1(10,9,8,7,6,5,4,3,2) | NPC1 | LNDTSLLHDPCLGTFGGPVFPWLVLGGYDGVFTVLCLVWRVWNCIWGQEVQLRIFWPTKTIAKGWI | VWNCIWGQEVQLR | No | Alternative | Junction | 13 | 2 | CTG | TGA | TransCirc | No |
chr18|23556242|23573574|-|7|circRNA|NPC1|ENST00000269228.9|8,7,6,5,4,3,2 | circNPC1(8,7,6,5,4,3,2) | NPC1 | LAVSFSSRWSSLLRVRQAWCLSGSQPIQLTSGQPPAARLAWKKSTLTSTLGLSSGRSSSSSGPLSLTNTFTSHTLRELMYPLDLRLTYRYCTRCFHSPVFGMESVELHMGTRGTIANILAHQNHCQRMDMT | LAVSFSSR | No | Alternative | Junction | 8 | 1 | CTG | TAG | TransCirc | No |
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