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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|80325198|80327815|+|1|ciRNA|RNF213|NM_001256071|18 | ciRNF213(18) | RNF213 | LGKVGGRRFDMMILNWDGLMFDKGCSLDRETLEGSECLAL | LGKVGGR | No | Alternative | Alternative | 7 | 2 | TTG | TAA | NA | No |
chr17|80325198|80327815|+|1|ciRNA|RNF213|NM_001256071|18 | ciRNF213(18) | RNF213 | LSDFPPAPRAPGVLWSRRERERHSILKTLESSWRVRP | APGVLWSRR | No | Alternative | Alternative | 9 | 1 | CTG | TAG | NA | No |
chr17|80325198|80327815|+|1|ciRNA|RNF213|NM_001256071|18 | ciRNF213(18) | RNF213 | MIGASGDTGQPLPVFEEVGAEQEVIWNSHGNGKEAGGGEPTVLTVFFIYSGMFAGVLGTSAQARWCLPDWERWEAEDLT | EAGGGEPTVLTVFFIYSGMFAGVLGTSAQAR | No | Junction | Junction | 31 | 1 | ATG | TGA | NA | No |
chr17|80339200|80340356|+|1|circRNA|RNF213|NM_001256071|26 | circRNF213(26) | RNF213 | LGALLPPLCLQPAQGLRHPPGTPRGHPSLPGRSLPGPEADPVGGSRVQ | SLPGPEADPVGGSR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | TransCirc | No |
chr17|80339200|80340356|+|1|circRNA|RNF213|NM_001256071|26 | circRNF213(26) | RNF213 | LPDPGLPGAQGLQPAVRRSAELRGGTPSGGAFPQSVHAAAPRRLPARHGL | GGTPSGGAFPQSVHAAAPR | No | Alternative | Alternative | 19 | 1 | CTG | TGA | TransCirc | No |
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